Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A01
(427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.70
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 27 0.92
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 1.2
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 26 2.1
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 2.8
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 3.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 3.7
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 25 3.7
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 3.7
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 3.7
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 4.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 6.5
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 24 8.6
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 24 8.6
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 24 8.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 8.6
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 0.70
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Frame = +1
Query: 28 DNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKE 207
++ N + +KK+VE N + L ++ ENL K + F + + + + +
Sbjct: 1390 NSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSK 1449
Query: 208 ISVDKVFKEFSHTLNEVIHYLAK-IIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLE 384
+ ++ ++ +L + H L + + Q TK +Q +K+ E + K L K LE
Sbjct: 1450 NAENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQ-LKSEKERTEKELADSKNELE 1508
Query: 385 PQLKQLYETLGK 420
+ + GK
Sbjct: 1509 HLQSEAVDADGK 1520
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 0.92
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 187 WDKFYKEISVDKVFKEFSHTLNEVIH-YLAKIIDEVLQGTKPIVDQIIKTFTETSNKILE 363
W Y + + + ++F + E H +L + DEV Q KP+V + I T + +LE
Sbjct: 147 WYFGYIPPAQESLLEDFEAKIEEQQHKHLENLGDEVEQDWKPLVIEQIPTRDDVEAILLE 206
Query: 364 MYKKTL 381
K L
Sbjct: 207 RRKNAL 212
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 97 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWD 192
L E S+ D ENL K +P F ++ F+ D
Sbjct: 52 LSENSNSDSENLAKTLSPIFDNLESVFKKGTD 83
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 2.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 340 ETSNKILEMYKKTLEPQLKQLYETLGKM 423
E K+ E Y+ +P+L++ Y+ LGK+
Sbjct: 50 EKFQKLAEAYQVLSDPKLREKYDKLGKV 77
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 2.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 121 FENLLKRATPYFKRIDDDFRAEWDK 195
F + K+ P+ KRI D+ +EW +
Sbjct: 291 FYTISKKPEPFIKRIADNLVSEWSR 315
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 211 SVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTK 306
SVDKV + + L E ++ + E+L+GT+
Sbjct: 632 SVDKVLDQTAEALEEFVNTAPPKVQELLKGTE 663
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKT 333
+I YLA I G+ + +QIIKT
Sbjct: 183 IIQYLAAIASSTTVGSSQVEEQIIKT 208
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 25.4 bits (53), Expect = 3.7
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -3
Query: 350 LDVSVNVFMI*STIGLVPCKTSSIILAK**MTSFRVCENSLNTLSTEISL*NLSHSALKS 171
L V V + + + I L P TSSIIL + FR+ L S N + S + +
Sbjct: 5 LKVVVTILNLPTPISLAPYFTSSIILK---YSMFRIASRQTRNLRALSSSKNWARSLVNT 61
Query: 170 SSIR 159
S R
Sbjct: 62 RSFR 65
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 3.7
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 142 ATPYFKR-IDDDFRAEWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVD 318
A PYF +D +F ++ K I +D K E L +++E+ K + D
Sbjct: 340 AYPYFSTCLDKEFMDLIEEHEKNI-LDAAVKSIDCLTKEGTEKLFALMEEI----KSVND 394
Query: 319 QIIKTFTETSNKILEMY 369
+ TETSNK++E +
Sbjct: 395 N--RYITETSNKVMENF 409
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 3.7
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 34 FNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDF 177
F L+ T++ D+EGLN + + S + + ++R + +D+ F
Sbjct: 133 FQSLLKTLETDIEGLN-LVDHTHDPSDESIKQTVQRLRSSIEGLDEAF 179
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 4.9
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -2
Query: 342 FSECLYDLIDNRFGSLQNFIDNLS*IMNDLVQSV*KFFEYFVNGNFLVE-FIPFGSKVIV 166
F +C LI+ F S Q FI S I++ L + K FVN NFL+ F + + +
Sbjct: 101 FLKCCELLINGGFESPQQFISLNSAILSALHRISTKRPVLFVN-NFLISLFSGLANILQI 159
Query: 165 NTFEVWC 145
++ E++C
Sbjct: 160 DSDELYC 166
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 6.5
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 55 VKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDD-DFRAEWDKFYKEISVDKVFK 231
V+K E L ++ + +KSS + E+ + +T + A+ F IS+D +
Sbjct: 1582 VQKVSERLQEQASEKDDKSSVESEHSILTSTTRTPSLGIYTTDAQLRNFLNRISIDAYEE 1641
Query: 232 EFSHTLNEVIHYLAKIIDEVLQ 297
+S + ++ + I EVLQ
Sbjct: 1642 SYSFSTIDIQSFENSIYREVLQ 1663
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.2 bits (50), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 103 EKSSQDFENLLKRATPYFKRIDDDFRAEWDKFY 201
+K S D +LL P K DD+ ++WD Y
Sbjct: 637 DKLSSDLSSLLTDE-PVVKTEMDDWNSDWDTVY 668
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 40 HLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFK 159
HL T VKK E + I L + + K A PY K
Sbjct: 386 HLPTNVKKAAEIKREEINSLKRREENIRRHSKKGAVPYEK 425
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 24.2 bits (50), Expect = 8.6
Identities = 30/116 (25%), Positives = 51/116 (43%)
Frame = +1
Query: 70 EGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEISVDKVFKEFSHTL 249
E L + G+ +LL R TP +A W ++ + S+ K E+S
Sbjct: 15 EILKAAVSKYGKNQWARISSLLVRKTP------KQCKARWYEWI-DPSIKKT--EWSREE 65
Query: 250 NEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYETLG 417
+E + +LAK++ + PIV + T+ + LE Y+K L+ + E LG
Sbjct: 66 DEKLLHLAKLLPTQWRTIAPIVGR-------TATQCLERYQKLLDDLEAKENEQLG 114
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 310 IVDQIIKTFTETSNKILEMYKKTLEPQLKQ 399
I D + F+E ++ + + +KK E ++K+
Sbjct: 443 IFDSFVNKFSELNDSLDQFFKKKYEEEIKE 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,888
Number of Sequences: 5004
Number of extensions: 32882
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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