Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A01
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0117 - 6779121-6779582 36 0.010
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 31 0.39
05_03_0238 - 10783451-10783735,10784686-10785762 30 0.90
07_01_0613 - 4535892-4536331,4536462-4536543,4537493-4537576,453... 29 2.1
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 29 2.1
05_03_0323 - 12424243-12424776 28 2.7
05_01_0143 - 944169-947273 28 3.6
09_04_0461 + 17781413-17781474,17781576-17781629,17781729-177818... 27 4.8
05_03_0102 + 8414109-8414505,8416172-8416227 27 4.8
10_08_0881 - 21268996-21269103,21269389-21269496,21269827-212699... 27 6.3
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 27 6.3
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 27 6.3
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 27 6.3
02_02_0530 - 11222463-11222765,11223075-11223176,11223298-112236... 27 6.3
08_01_0758 - 7193287-7193871,7193965-7194421,7194437-7194655,719... 27 8.3
08_01_0757 - 7164380-7164490,7164585-7165041,7165057-7165275,716... 27 8.3
>05_02_0117 - 6779121-6779582
Length = 153
Score = 36.3 bits (80), Expect = 0.010
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 4 RGEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 183
R Y S +++ L T V+GL++ + KS NLLK+A F+ R
Sbjct: 49 REAYYESPEDYPLLRTNNPVKVDGLSEEWVEKNSKSVIKTANLLKKADDSFEEFQKQVRK 108
Query: 184 EWDKFYKEISVD 219
E +K Y E+ +D
Sbjct: 109 EVEKGYYEVGMD 120
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 31.1 bits (67), Expect = 0.39
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +1
Query: 28 DNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKE 207
D + + TT+K+ VE ++ ++D EK ++ + A P E+++ ++
Sbjct: 325 DGYVNARTTLKQFVEQYDNALRDKVEKENKSDCKSFQEAIPCITHY------EFERQFQV 378
Query: 208 ISVDKVFKEFSHTLNEVIHYLAKI 279
+K FKEF L I+Y A +
Sbjct: 379 AYTNKKFKEFQDELRGKIYYYATL 402
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 29.9 bits (64), Expect = 0.90
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +1
Query: 88 IKDLGEKSSQDFENL---LKRATPYFKRIDDDFRAEWDKFYKEISVDKVFKEFSHTLNEV 258
++D+G S ++F+ + LK+ + D + F KEI ++ + + L V
Sbjct: 221 LRDMGFVSKKEFDEIVEQLKKKKGLDGTVGDISLDDIRLFAKEIVEMEIERHAADGLGMV 280
Query: 259 IHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQ 399
+ LA +V++ ++ + K+F + N +LE KK LEP Q
Sbjct: 281 DYALASGGGKVVKHSEAF--RKAKSFMPSRNSLLEQAKKMLEPSFGQ 325
>07_01_0613 -
4535892-4536331,4536462-4536543,4537493-4537576,
4537669-4537845,4538192-4538351,4539357-4539685
Length = 423
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 DDDFRAEWDKFYKEISVDKVFKEFSHTLNEVIHYLAK 276
DD+FR +WD ++ K+ +EF +IH++ K
Sbjct: 189 DDEFRLKWDPM---LAYFKILEEFPQNGTMIIHWIKK 222
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 52 TVKKDVEGLNDRIKDLGEKSSQDFENLLKRAT 147
T+++ E +ND K+LGE SS++ ++ L A+
Sbjct: 18 TLEEQQEKINDLRKELGEHSSEEIQDFLSDAS 49
>05_03_0323 - 12424243-12424776
Length = 177
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 4 RGEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 126
R +Y A +D M + +EG+ D + EK+ QDFE
Sbjct: 22 RLQYKALRDVLRREMNSRMDTLEGITDELSQKFEKTIQDFE 62
>05_01_0143 - 944169-947273
Length = 1034
Score = 27.9 bits (59), Expect = 3.6
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Frame = +1
Query: 76 LNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
+ DR+K + ++ ++ KRA Y+KR + + + + ++ + + S L++
Sbjct: 1 MEDRVKFILFLLGEEADSFAKRAEMYYKRRPEVISSVEEAYRAYRALAERYDHISGELHK 60
Query: 256 VIHYLAKIIDEVLQGT--KPIVDQIIKTFTETSNKILEMYKKTLEPQLKQ 399
H +A + +Q + + D + K FT + +++K T+E +K+
Sbjct: 61 ANHTIATAFPDQVQYSMLEEDDDNLPKAFTAVDPR--KIHKSTVEGLMKK 108
>09_04_0461 +
17781413-17781474,17781576-17781629,17781729-17781839,
17781921-17781991,17782256-17782449,17783019-17783096
Length = 189
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 241 HTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQ 399
H L E + Y+A+I+D+ Q V+ IIK + SN+I + +E K+
Sbjct: 138 HKLAEEVEYIAEIVDKDAQK----VEIIIKKIEDVSNRIDAAVEPVIEELEKE 186
>05_03_0102 + 8414109-8414505,8416172-8416227
Length = 150
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 4 RGEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 126
R +Y A +D M + +EG D + EK+ QDFE
Sbjct: 22 RLQYNALRDVLRREMNSRMDTLEGRTDELSQKFEKTIQDFE 62
>10_08_0881 -
21268996-21269103,21269389-21269496,21269827-21269916,
21270010-21270246,21270335-21270901
Length = 369
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 16 GASKDNFNHLMTTVKKDVEGLNDRIK 93
G + L TT+K++VEGL + +K
Sbjct: 300 GVTSSTLEELSTTIKQEVEGLQEAMK 325
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 34 FNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDD 171
F LM V +++ +IKD+ + + FEN L + FK+ D
Sbjct: 102 FVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAAD 147
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 349 NKILEMYKKTLEPQLKQLYETL 414
N+ILEMYKK L P K TL
Sbjct: 593 NEILEMYKKYLNPDFKWTNFTL 614
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 245 VCENSLNTLSTEISL*NLSHSALKSSSIRLKYGVARFRRFSKSWLD 108
VC + N L++E L H KSS + K +A F RF K W D
Sbjct: 499 VCLSESNCLNSEDIL--AFHIIFKSSLCQKKSLIAIFYRFVKMWQD 542
>02_02_0530 -
11222463-11222765,11223075-11223176,11223298-11223622,
11224072-11224106
Length = 254
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEI 210
D ++D+ ++ QD N +K +DD R W+K ++
Sbjct: 145 DMVRDINDEHDQDIVNAVKCVRSTRGHLDDLRRHGWEKLESDV 187
>08_01_0758 -
7193287-7193871,7193965-7194421,7194437-7194655,
7194881-7195419
Length = 599
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 185 NGINSTRKFPLTKYSKNFH 241
NG ST K P T YSK H
Sbjct: 104 NGATSTTKIPTTDYSKETH 122
>08_01_0757 -
7164380-7164490,7164585-7165041,7165057-7165275,
7165501-7165757
Length = 347
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 185 NGINSTRKFPLTKYSKNFH 241
NG ST K P T YSK H
Sbjct: 10 NGATSTTKIPTTDYSKETH 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.135 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,693,929
Number of Sequences: 37544
Number of extensions: 171618
Number of successful extensions: 490
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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