Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A01
(427 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87930-1|BAA22378.1| 1030|Homo sapiens myosin phosphatase target... 32 0.93
BC111752-1|AAI11753.1| 1030|Homo sapiens PPP1R12A protein protein. 32 0.93
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 1.2
AY380574-1|AAQ88438.1| 974|Homo sapiens myosin phosphatase targ... 31 1.2
AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subu... 31 1.2
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 1.2
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 31 1.2
U77700-1|AAC51648.1| 1928|Homo sapiens HsGCN1 protein. 31 1.6
D86973-1|BAA13209.2| 2675|Homo sapiens KIAA0219 protein. 31 1.6
AC004812-3|AAC83183.1| 2392|Homo sapiens WUGSC:H_267D11.3 protein. 31 1.6
DQ301446-1|ABC00999.1| 493|Homo sapiens TRIM5 protein. 30 2.8
DQ301445-1|ABC00998.1| 493|Homo sapiens TRIM5 protein. 30 2.8
BC134417-1|AAI34418.1| 363|Homo sapiens chromosome 20 open read... 30 2.8
AL034548-3|CAB81629.2| 363|Homo sapiens chromosome 20 open read... 30 2.8
AL034548-2|CAI19175.2| 328|Homo sapiens chromosome 20 open read... 30 2.8
BC056202-1|AAH56202.1| 813|Homo sapiens calpain 7 protein. 29 5.0
AK097394-1|BAC05033.1| 363|Homo sapiens protein ( Homo sapiens ... 29 5.0
AK091924-1|BAC03772.1| 179|Homo sapiens protein ( Homo sapiens ... 29 5.0
AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy cha... 29 5.0
DQ301447-1|ABC01000.1| 493|Homo sapiens TRIM5 protein. 29 6.6
DQ301444-1|ABC00997.1| 493|Homo sapiens TRIM5 protein. 29 6.6
X07496-1|CAA30377.1| 267|Homo sapiens ApoA-I protein. 29 8.7
X02162-1|CAA26097.1| 267|Homo sapiens preproapolipoprotein AI p... 29 8.7
X01038-1|CAA25519.1| 267|Homo sapiens apolipoprotein AI precurs... 29 8.7
X00566-1|CAA25232.1| 267|Homo sapiens protein ( Human mRNA for ... 29 8.7
M29068-1|AAA51747.1| 249|Homo sapiens APOA1 protein. 29 8.7
M27875-1|AAA62829.1| 267|Homo sapiens APOA1 protein. 29 8.7
J00098-1|AAB59514.1| 267|Homo sapiens APOA1 protein. 29 8.7
BC110286-1|AAI10287.1| 267|Homo sapiens apolipoprotein A-I prot... 29 8.7
BC005380-1|AAH05380.1| 267|Homo sapiens apolipoprotein A-I prot... 29 8.7
AY555191-4|AAS68227.1| 267|Homo sapiens apolipoprotein A-I prot... 29 8.7
AY422952-1|AAQ91811.1| 267|Homo sapiens apolipoprotein A-I prot... 29 8.7
>D87930-1|BAA22378.1| 1030|Homo sapiens myosin phosphatase target
subunit 1 protein.
Length = 1030
Score = 31.9 bits (69), Expect = 0.93
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 97 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEI-SVDKVFKEFSHTLNEVIHYLA 273
LG S + L+ PY R++ D ++ K Y++I + ++ K H N + L
Sbjct: 905 LGRSGSYSY---LEERKPYSSRLEKDDSTDFKKLYEQILAENEKLKAQLHDTNMELTDLK 961
Query: 274 KIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQL 402
+++ Q + D+ + + + LE +E +LK L
Sbjct: 962 LQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEELKML 1004
>BC111752-1|AAI11753.1| 1030|Homo sapiens PPP1R12A protein protein.
Length = 1030
Score = 31.9 bits (69), Expect = 0.93
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 97 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEI-SVDKVFKEFSHTLNEVIHYLA 273
LG S + L+ PY R++ D ++ K Y++I + ++ K H N + L
Sbjct: 905 LGRSGSYSY---LEERKPYSSRLEKDDSTDFKKLYEQILAENEKLKAQLHDTNMELTDLK 961
Query: 274 KIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQL 402
+++ Q + D+ + + + LE +E +LK L
Sbjct: 962 LQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEELKML 1004
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 268 LAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYETLGKML 426
L KII E + K +VD I+ F ++ +E + K +EP L + E L ++
Sbjct: 171 LLKIIHEKYKTNKKVVDPIVSNFLQSFETAIE-HNKEVEPLLGRAQENLNPLV 222
>AY380574-1|AAQ88438.1| 974|Homo sapiens myosin phosphatase target
subunit 1 variant 2 protein.
Length = 974
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 97 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEI-SVDKVFKEFSHTLNEVIHYLA 273
LG S + L+ PY R++ D ++ K Y++I + ++ K H N + L
Sbjct: 849 LGRSGSYSY---LEERKPYSSRLEKDDSPDFKKLYEQILAENEKLKAQLHDTNMELTGLK 905
Query: 274 KIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQL 402
+++ Q + D+ + + + LE +E +LK L
Sbjct: 906 LQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEELKML 948
>AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subunit
RPC155-A protein.
Length = 374
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 268 LAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYETLGKML 426
L KII E + K +VD I+ F ++ +E + K +EP L + E L ++
Sbjct: 171 LLKIIHEKYKTNKKVVDPIVSNFLQSFETAIE-HNKEVEPLLGRAQENLNPLV 222
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 268 LAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYETLGKML 426
L KII E + K +VD I+ F ++ +E + K +EP L + E L ++
Sbjct: 171 LLKIIHEKYKTNKKVVDPIVSNFLQSFETAIE-HNKEVEPLLGRAQENLNPLV 222
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 268 LAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYETLGKML 426
L KII E + K +VD I+ F ++ +E + K +EP L + E L ++
Sbjct: 171 LLKIIHEKYKTNKKVVDPIVSNFLQSFETAIE-HNKEVEPLLGRAQENLNPLV 222
>U77700-1|AAC51648.1| 1928|Homo sapiens HsGCN1 protein.
Length = 1928
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +1
Query: 187 WDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEM 366
+++F K D + ++ ++ LAK +D+ KPIV ++I + S ++ E
Sbjct: 458 FEEFLKNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQES 517
Query: 367 YKKTLEPQLKQLYETLGKML 426
L P + + E G M+
Sbjct: 518 VASCLPPLVPAIKEDAGGMI 537
>D86973-1|BAA13209.2| 2675|Homo sapiens KIAA0219 protein.
Length = 2675
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +1
Query: 187 WDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEM 366
+++F K D + ++ ++ LAK +D+ KPIV ++I + S ++ E
Sbjct: 1303 FEEFLKNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQES 1362
Query: 367 YKKTLEPQLKQLYETLGKML 426
L P + + E G M+
Sbjct: 1363 VASCLPPLVPAIKEDAGGMI 1382
>AC004812-3|AAC83183.1| 2392|Homo sapiens WUGSC:H_267D11.3 protein.
Length = 2392
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +1
Query: 187 WDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEM 366
+++F K D + ++ ++ LAK +D+ KPIV ++I + S ++ E
Sbjct: 1020 FEEFLKNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQES 1079
Query: 367 YKKTLEPQLKQLYETLGKML 426
L P + + E G M+
Sbjct: 1080 VASCLPPLVPAIKEDAGGMI 1099
>DQ301446-1|ABC00999.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 30.3 bits (65), Expect = 2.8
Identities = 27/118 (22%), Positives = 52/118 (44%)
Frame = +1
Query: 4 RGEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 183
R E + K + T V D E L D I D E S + +NL K K + + +
Sbjct: 164 REEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN---S 217
Query: 184 EWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 357
E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 218 ETEMVQQTQSLRELISDLEHXLQGSVMELLQXVDGVIKRTENVTLKKPETFPKNQRRV 275
>DQ301445-1|ABC00998.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 30.3 bits (65), Expect = 2.8
Identities = 27/118 (22%), Positives = 52/118 (44%)
Frame = +1
Query: 4 RGEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 183
R E + K + T V D E L D I D E S + +NL K K + + +
Sbjct: 164 REEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN---S 217
Query: 184 EWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 357
E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 218 ETEMVQQTQSLRELISDLEHXLQGSVMELLQXVDGVIKRTENVTLKKPETFPKNQRRV 275
>BC134417-1|AAI34418.1| 363|Homo sapiens chromosome 20 open reading
frame 96 protein.
Length = 363
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 10 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 189
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277
Query: 190 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 288
+ Y+E + K+++ S + + +IID+
Sbjct: 278 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 308
>AL034548-3|CAB81629.2| 363|Homo sapiens chromosome 20 open reading
frame 96 protein.
Length = 363
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 10 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 189
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277
Query: 190 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 288
+ Y+E + K+++ S + + +IID+
Sbjct: 278 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 308
>AL034548-2|CAI19175.2| 328|Homo sapiens chromosome 20 open reading
frame 96 protein.
Length = 328
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 10 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 189
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 183 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 242
Query: 190 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 288
+ Y+E + K+++ S + + +IID+
Sbjct: 243 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 273
>BC056202-1|AAH56202.1| 813|Homo sapiens calpain 7 protein.
Length = 813
Score = 29.5 bits (63), Expect = 5.0
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Frame = +1
Query: 103 EKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEI-SVDKVFKEFSHTL-NEVIHYLAK 276
E + EN+ ++ T Y +R+ A K + S ++ E +H L + K
Sbjct: 44 EMAGSSLENIQEKITEYLERVQALHSAVQSKSADPLKSKHQLDLERAHFLVTQAFDEDEK 103
Query: 277 I-IDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYETLGKML 426
+++ ++ VD +KT ET++K+L+ K L Q E LG+ L
Sbjct: 104 ENVEDAIELYTEAVDLCLKTSYETADKVLQNKLKQLARQALDRAEALGEPL 154
>AK097394-1|BAC05033.1| 363|Homo sapiens protein ( Homo sapiens
cDNA FLJ40075 fis, clone TESTI2000489. ).
Length = 363
Score = 29.5 bits (63), Expect = 5.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 10 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 189
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277
Query: 190 DKFYKEISVDKVFK 231
+ Y+E + K+++
Sbjct: 278 QRPYEEALLQKMWE 291
>AK091924-1|BAC03772.1| 179|Homo sapiens protein ( Homo sapiens
cDNA FLJ34605 fis, clone KIDNE2013489. ).
Length = 179
Score = 29.5 bits (63), Expect = 5.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 10 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 189
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 83 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 142
Query: 190 DKFYKEISVDKVFK 231
+ Y+E + K+++
Sbjct: 143 QRPYEEALLQKMWE 156
>AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy chain
dynein type 11 protein.
Length = 4523
Score = 29.5 bits (63), Expect = 5.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 160 RIDDDFRAEWDKFYKEISVDKVFKEFSHT 246
R++DD R DK KE+ +KV E S T
Sbjct: 1444 RVEDDVRRIVDKAVKELGTEKVITEISQT 1472
>DQ301447-1|ABC01000.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.1 bits (62), Expect = 6.6
Identities = 27/118 (22%), Positives = 52/118 (44%)
Frame = +1
Query: 4 RGEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 183
R E + K + T V D E L D I D E S + +NL K K + + +
Sbjct: 164 REEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN---S 217
Query: 184 EWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 357
E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 218 ETEMVQQTQSLRELISDLEHXLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRV 275
>DQ301444-1|ABC00997.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.1 bits (62), Expect = 6.6
Identities = 27/118 (22%), Positives = 52/118 (44%)
Frame = +1
Query: 4 RGEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 183
R E + K + T V D E L D I D E S + +NL K K + + +
Sbjct: 164 REEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN---S 217
Query: 184 EWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 357
E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 218 ETEMVQQTQSLRELISDLEHXLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRV 275
>X07496-1|CAA30377.1| 267|Homo sapiens ApoA-I protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>X02162-1|CAA26097.1| 267|Homo sapiens preproapolipoprotein AI
protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>X01038-1|CAA25519.1| 267|Homo sapiens apolipoprotein AI precursor
protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>X00566-1|CAA25232.1| 267|Homo sapiens protein ( Human mRNA for
lipoprotein apoAI. ).
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>M29068-1|AAA51747.1| 249|Homo sapiens APOA1 protein.
Length = 249
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 26 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 83
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 84 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 134
>M27875-1|AAA62829.1| 267|Homo sapiens APOA1 protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>J00098-1|AAB59514.1| 267|Homo sapiens APOA1 protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>BC110286-1|AAI10287.1| 267|Homo sapiens apolipoprotein A-I
protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>BC005380-1|AAH05380.1| 267|Homo sapiens apolipoprotein A-I
protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>AY555191-4|AAS68227.1| 267|Homo sapiens apolipoprotein A-I
protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
>AY422952-1|AAQ91811.1| 267|Homo sapiens apolipoprotein A-I
protein.
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 DRIKDLGEKSSQDFENLLKRATPYFKRID--DDFRAEWDKFYKEISVDKVFKEFSHTLNE 255
D +KD G FE K +D D + + K +++ V +EF L +
Sbjct: 44 DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLG--PVTQEFWDNLEK 101
Query: 256 VIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKILEMYKKTLEPQLKQLYE 408
L + + + L+ K V + F + + +E+Y++ +EP +L E
Sbjct: 102 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 152
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.316 0.135 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,433,192
Number of Sequences: 237096
Number of extensions: 879811
Number of successful extensions: 2510
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2508
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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