Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P24
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    27   1.7  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   2.9  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    26   3.8  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   6.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   8.8  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    25   8.8  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   8.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   8.8  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 243 FTISRYQYFFVLFIVFSYEY 184
           F +  +QYFF  FI+ S++Y
Sbjct: 127 FIVPAFQYFFAFFIIDSWQY 146


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 92  PRAGRSSVCRSAVTSASAPGPPGP 163
           PR    ++ ++A+TSAS P PP P
Sbjct: 408 PRPLNPTLLQNALTSASLPSPPTP 431


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = +2

Query: 152 PPGPTILTSNR---YSY---EKTINNTKKY**REIVKQLRG 256
           PP PTI+TS     Y+    E +IN TK +   ++VK LRG
Sbjct: 44  PPKPTIITSQVCPVYTLGRRESSINFTKGFPKAKVVKALRG 84


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 371 EAEGGVYDISNKRRMGLTEYEAVKE 297
           EA G +YDI  + R  L EY A  E
Sbjct: 169 EAHGSIYDICFRWRKKLIEYRAFLE 193


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 267 DREVPLSC-FTISRYQYFFVLFI 202
           D +   +C +TISR +YFF++F+
Sbjct: 257 DNDNTKACNWTISRLRYFFIVFV 279


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 341 NKRRMGLTEYEAVKEMYDGIAELIKIE 261
           N R +    Y+AVK+ YD   ++  I+
Sbjct: 50  NNRNLAFKAYDAVKQKYDSSIKVFNIQ 76


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 122 SAVTSASAPGPPGPTILTSNRYSYEKTINN 211
           S V ++  P PP     ++  +SY K +NN
Sbjct: 34  SKVNASINPSPPRSNDNSNKEFSYSKDVNN 63


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 177  DVRIVGPGGPGADALVTALRH 115
            DV ++G G  G D L T++RH
Sbjct: 1899 DVIVIGGGDTGNDCLGTSVRH 1919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,776
Number of Sequences: 5004
Number of extensions: 35673
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)