Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P23
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.1
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 27 2.0
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.0
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 27 2.0
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 27 2.6
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 3.4
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 26 4.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 4.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 4.5
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 4.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.5
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 26 4.5
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 6.0
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 6.0
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 7.9
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 238 PSGLAFDLDKQTCDWKGKVNNCDKLEKPRKILPILKTDEPICPEGKLACGSGDCIE 405
PSG+ ++ K T W G N + R I + + E C GK+ G +E
Sbjct: 573 PSGVCLEIKKGTFSWSGPGQNAAE-PTLRDIDFVARRGELCCIVGKVGMGKSSLLE 627
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 190 RDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNN 300
R++ +CT S Q CPS LA LDK + KV++
Sbjct: 142 RELQKCTASYYHQNACPSSLA--LDKSISEAFAKVDH 176
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 467 PSMSIPTEHRTATPSNVYSXDCFCSADGTRIPG 565
PS++ P RT +P Y DC A G+ G
Sbjct: 16 PSVNKPFRSRTPSPEREYCSDCPLQAKGSACNG 48
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 572 LFHLGYEYHPRSRSNQXSTHCLGSQSGALLGSTSTVQAFSSDSSL 438
+FHL + Y+P R C G A++ + T+QA S L
Sbjct: 87 VFHLSFLYNPFCRYTFYKHFCGGETPQAVMATMDTLQAAGITSCL 131
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 357 GLVGFQDGQDFSRLLQFVTVVDFTLPVAG 271
G++G + G +SRL VTVV+F LP G
Sbjct: 226 GIIGLEMGSVWSRLGAEVTVVEF-LPAVG 253
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 3.4
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -2
Query: 575 ALFHLGYEYHP-RSRSNQXSTHCLGSQSGALLGSTSTVQAFSSDSSLQSGLPLQNSSFSM 399
+LF+ + P R SN+ T L S SG++ STST S LP QN+
Sbjct: 296 SLFNAFFSSMPDRPSSNEPMTSNLTSNSGSMTNSTST-------DLPTSNLPSQNAPARP 348
Query: 398 QSPLPQASFPS 366
P P P+
Sbjct: 349 VEPSPSIQPPN 359
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 454 RLIHLYNQVCRYKTVPFQCSHHS 386
R+ LYN + T PF C H+
Sbjct: 603 RVTKLYNSYIEFSTTPFDCYGHN 625
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = -2
Query: 338 MGKIFLGFSSLSQLLTLPFQSQVCLSRSNASPD-----GQVICLRPDLVHLTTSLQSPSV 174
MG F S ++ P + CL+ +A+PD Q + L + L T SP +
Sbjct: 217 MGLYFDNVGWSSHIIHRPSFEEACLNLYSAAPDRTNPQPQFLSLTYMVFCLGTLFTSPVL 276
Query: 173 LRRKYSSA 150
+R +YS A
Sbjct: 277 VRNRYSLA 284
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 455 SSDSSLQSGLPLQNSSFSMQSPLPQASFPSGQMGSSVFKMGKIFLGF 315
+S LQ P+Q+S+F+ +P P + P + ++ MG + F
Sbjct: 271 ASADRLQKNHPVQSSNFNPYTPAPSITVPPNYIPNTAM-MGPSYSSF 316
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.8 bits (54), Expect = 4.5
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -2
Query: 557 YEYHPRSRSNQXSTHCLGSQSGALLGSTSTVQAFSSDSSLQSGLPLQNSSFSMQSPLPQA 378
+ +HPRSR ++ A+ S + SS+S SG+ S + SPL Q
Sbjct: 154 FPHHPRSRR-------FSLKNAAIATSYHKFKPLSSNSLSSSGMHFSASKQAFNSPLLQT 206
Query: 377 SFPS 366
PS
Sbjct: 207 FSPS 210
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 4.5
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -2
Query: 551 YHPRSRSNQXSTHCLGSQSGALLGSTSTVQAFSSDSSLQSGLP-LQNSSFSMQSPLP 384
+ P S SN G G +L + V A SS S P LQN + SP P
Sbjct: 96 HSPSSSSNDSVITATGVPDG-ILRDSPIVSALEPPSSNSSSSPQLQNLKHQLSSPQP 151
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -2
Query: 539 SRSNQXSTHCLGSQSGALLGSTSTVQAFSSDSSLQSGLPLQNSSFSMQSPLPQASFPSGQ 360
S + T + + +G + S D++LQS PL+ + +S + + PS
Sbjct: 505 SSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLKKAKEPEESSITPTTPPSFN 564
Query: 359 MGSSV 345
+G S+
Sbjct: 565 VGESL 569
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 208 TRSGLKQITCPSGLAFDLDKQTCDWKGKV 294
TRS ++ P + +LDKQT D K KV
Sbjct: 461 TRSAPGELVKPQEVIQELDKQTSDIKDKV 489
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 155 TNISVSAPKAIVEMSS--GALGQVLNRSLA 238
+N SV+AP+AIV S+ G +G +LN +A
Sbjct: 271 SNASVAAPRAIVMTSAFGGIVGWLLNLCIA 300
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 386 PQASFPSGQMGSSVFKMGKIFLGFSS 309
P FP G S F MG F GF+S
Sbjct: 447 PGGGFPGGSYNSQGFGMGGGFPGFTS 472
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.0 bits (52), Expect = 7.9
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -1
Query: 405 FNAVTTPAG*FSFRTDGLVGFQDGQDFSRLLQFVTVVDFTLPVAGLFIKIECQSRRAS 232
F A T G F RTDGLV + Q RL V + PV I+I+ ++R S
Sbjct: 220 FGAFVTLDG-FRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVFVKVIRIDESAKRIS 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,477
Number of Sequences: 5004
Number of extensions: 43359
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -