Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P23
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    31   0.87 
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     29   3.5  
03_06_0196 + 32260357-32260785                                         29   3.5  
09_04_0229 - 15867333-15868033,15868097-15869249                       28   4.6  
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    28   6.1  
04_04_0905 - 29290998-29291486                                         28   6.1  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           28   6.1  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    27   8.1  
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764     27   8.1  

>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 403  EKELFCNGKPDCKDESDENACTVDVDPNRAP 495
            +++L C+G  D KD S+  AC   +D N  P
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVP 1032


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 424 GKPDCKDESDENACTV-DVDPN 486
           GKPDC  E D++ C V D DP+
Sbjct: 72  GKPDCGGEEDDDDCVVLDGDPD 93


>03_06_0196 + 32260357-32260785
          Length = 142

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 70  SGESRVKRQEDDGSDDL--TPDQLCEGRPADEYFRLSTEGDCRD 195
           SGE  +  + DD  D      D +CE  P DE F    E DC +
Sbjct: 59  SGEEDLDDETDDDIDQCFDEEDGICEENPDDEIFDDDEEIDCEE 102


>09_04_0229 - 15867333-15868033,15868097-15869249
          Length = 617

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 131 NCARA-GQQTNISVSAPKAIVEMSSGALGQVLNRSLARLDWHSILINKP 274
           +CA + G+  N SVS+PK I+  +   +G  ++++  R D   I+ N P
Sbjct: 109 SCATSIGKAANASVSSPKDIIRTAVDVIGGAVDQAFDRAD--LIMSNDP 155


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 421 NGKPDCKDESDENACTVDVDPNRAPDCDPKQ 513
           NG+ + ++E D++   VD D  RAP+  P+Q
Sbjct: 70  NGRHEEEEEEDDDDDEVDNDVRRAPERRPRQ 100


>04_04_0905 - 29290998-29291486
          Length = 162

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 88  KRQEDDGSDDLTPDQLCEGRPADEYFRLS-TEGDCRD 195
           +R++  G D L P+ +  G P  EY +L+    DC D
Sbjct: 56  RRRDPLGDDGLQPEAVKRGLPLVEYMQLADLSADCHD 92


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 557 YEYHPRSRSNQXSTHCLGSQSGALLGSTSTVQAFSSDSSLQ 435
           Y  H  + S+  +  CL SQS ALL   S+    S  SS Q
Sbjct: 30  YSIHAAANSSNTTIRCLTSQSSALLQLKSSFHDASRLSSWQ 70


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = -2

Query: 503 SQSGALLGSTSTVQAFSSDSSLQSGLPLQNSSFSMQSPLPQASFPSGQMGSS 348
           SQS ++  S S    FSS SS +S L  Q+ S +  S  P  SF S Q GS+
Sbjct: 744 SQSSSITTSGSVPFQFSSQSSSESSLAGQDKSKAASSSAP-FSF-SPQFGST 793


>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
          Length = 515

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +1

Query: 178 EGDCRDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKG 288
           E DC DV  C R       C     FD D  TC W G
Sbjct: 177 ECDC-DVCCCRRGFCNLCMCVVCNGFDFDVNTCRWIG 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,851
Number of Sequences: 37544
Number of extensions: 318920
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)