Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P23
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 278 SQVCLSRSNASPDGQVICLRPDLVHLTTSLQSPSVL 171
           S   L +S   PDGQVI +  +      +L  PS L
Sbjct: 7   SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 42


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +1

Query: 73  GESRVKRQEDDGSDDLTPDQLCEGRPADEYFRLSTEGDCRDVVRCTRSGLKQITCPSGL 249
           G    K+ +   SDD        G  A+  F  STE D  ++     S L  I   SGL
Sbjct: 331 GARAKKKSKKKESDDKKVISSKSGSKANSPFPGSTEADIIELQDLRMSPLPSIRNRSGL 389


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 369  FRTDGLVGFQDGQDFSRLLQFVT 301
            + T  L+GF++  D S+ +QF T
Sbjct: 1725 YATFHLLGFREEMDPSKAMQFQT 1747


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 168 TEIFVCWPALAQLIRSQIIRPVVFLPLN 85
           T + + W A   +    II  ++F+P N
Sbjct: 393 TSVLIGWSAFLCISLVYIIMLIIFIPRN 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,863
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)