Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P21
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   146   1e-35
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   144   7e-35
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    28   5.4  
10_08_0694 - 19929918-19930292,19930633-19930866                       28   5.4  
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    27   9.4  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    27   9.4  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  146 bits (354), Expect = 1e-35
 Identities = 73/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
 Frame = +3

Query: 174 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 353
           LRP+V+C T++Y+ K RAGRGFTL E++A+G+   FA TIGI+VD RR+N+S+E LQ NV
Sbjct: 54  LRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANV 113

Query: 354 QRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDE 527
           QRLK Y+A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV    +T+D 
Sbjct: 114 QRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDM 173

Query: 528 KNFKAYQYLRGARSIAKLVGIRAKRLKDA 614
           K FKAY  LR  R   + +G R KR  +A
Sbjct: 174 KAFKAYAKLRVERMNQRHIGARQKRAAEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  144 bits (348), Expect = 7e-35
 Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
 Frame = +3

Query: 174 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 353
           LRP+V+C T++Y+ K RAGRGFTL E++A+G+   +A TIGI+VD RR+N+S+E LQ NV
Sbjct: 54  LRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANV 113

Query: 354 QRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDE 527
           QRLK Y+A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV    +T++ 
Sbjct: 114 QRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEM 173

Query: 528 KNFKAYQYLRGARSIAKLVGIRAKRLKDA 614
           K FKAY  LR  R   + VG R KR  +A
Sbjct: 174 KAFKAYAKLRVERMNQRHVGARQKRAAEA 202


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 602 SLGSDAHKFGNRTSSSKVLISFEVLLILS 516
           S   ++HK  N+T SS+ L+SF+ +L+L+
Sbjct: 575 STSVESHKQANKTESSQGLLSFQDVLLLT 603


>10_08_0694 - 19929918-19930292,19930633-19930866
          Length = 202

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 315 RRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAP 494
           R N   + + + +   K     LI+ P G +VL+G   E++ K A ++   L  +++   
Sbjct: 54  RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFV 113

Query: 495 K 497
           K
Sbjct: 114 K 114


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 340 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 173
           + ST      GSTA    LA+  F+ E  +SRR   LPAR FV  +  +G +  GLR
Sbjct: 73  SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 330 VESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQL 458
           ++SL+  VQR+ E R R +L P G        ++E R  A  +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,521
Number of Sequences: 37544
Number of extensions: 310584
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)