Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P21
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 147 7e-36
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 48 7e-06
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 31 0.69
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 31 0.69
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 28 4.8
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 28 6.4
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 147 bits (356), Expect = 7e-36
Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%)
Frame = +3
Query: 117 KQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIG 296
+QNR LR VVRCP RY+TK R GRGF+L+E++A+G++ + ARTIG
Sbjct: 36 RQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIG 95
Query: 297 IAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLM 473
IAVD RR NK+ E L+ N RLKEY+A+LILFP K KG+++ EE K+A QLRG ++
Sbjct: 96 IAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVL 155
Query: 474 PVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAD 620
P+ T R +T+ E+ + ++ LR R+ K G R KR ++AA+
Sbjct: 156 PLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKREKRAREAAE 204
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = +3
Query: 117 KQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLN 272
+QNR LR VVRCP RY+TK R GRGF+L+E++A+ N
Sbjct: 36 RQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAEEN 87
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 384 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 539
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 384 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 539
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 384 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 539
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -3
Query: 614 RILQSLGSDAHKFGNRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLSSQFAL 435
++ + L D H +SS + I +LIL + S N +LY +QG T ++ +F L
Sbjct: 231 KVCKKLEFDLHLIACFFASSVMFIYIANILILME-SENIEDKEILYGYQGLTSIAGKFVL 289
Query: 434 FFI 426
F+
Sbjct: 290 TFV 292
>Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -3
Query: 614 RILQSLGSDAHKFGNRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLSSQFAL 435
++ + L D H +SS + I +LIL + S N +LY +QG T ++ +F L
Sbjct: 231 KVCKKLEFDLHLIACFFASSVMFIYIANILILME-SENIEDKEILYGYQGLTSIAGKFVL 289
Query: 434 FFI 426
F+
Sbjct: 290 TFV 292
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 393 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARS 569
PKGKK K ++ E+++ + R PV+ + EDEK + + ++
Sbjct: 43 PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102
Query: 570 IAKLVGIRAKRLK 608
K G + K K
Sbjct: 103 SKKATGSKKKNKK 115
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 185 CSLPYCALSYKSSCRQRIYPT 247
CS P C S +SSC+Q PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,087
Number of Sequences: 27780
Number of extensions: 269687
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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