Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P20
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    44   4e-06
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    43   1e-05
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    40   7e-05
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    28   0.37 
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   1.5  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    24   6.1  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    23   8.1  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 44.4 bits (100), Expect = 4e-06
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +1

Query: 190 EHLKPEFLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKY 309
           E   PE L LNP   VPTL+D   +  +IWES AI+ YL +KY
Sbjct: 40  EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKY 82


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +1

Query: 187 GEHLKPEFLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKY 309
           GE    E L LNP   VPTLVD   +  +IWES AI+ YL +KY
Sbjct: 39  GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKY 82


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 40.3 bits (90), Expect = 7e-05
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 202 PEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYG 312
           P + KL+P    P +VDDG++  ES AI+ +LV KYG
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYG 76


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -1

Query: 87  INRHYL----AFLNRKRAHANTFCHSK*SS 10
           INRH +    AFLNRK+A  N F H   SS
Sbjct: 50  INRHEMERRIAFLNRKQALFNAFMHDSSSS 79


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 199 KPEFLKLNPQHTVPTLVDDGL---SIWESRAIITYLVNKY 309
           KP+FL  NPQ  V + V +GL   +  E    + YL+ +Y
Sbjct: 349 KPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY 388


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 GEHLKPEFLKLNPQHTVPTLVDDGL 261
           GE+  P  ++   QH +P + +DGL
Sbjct: 285 GENAGPRKVETIKQHKIPAINEDGL 309


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 196 LKPEFLKLNPQHTVPTLVDDGL 261
           LKP   KL P +  P+ +DD L
Sbjct: 351 LKPWIEKLKPSNNTPSEIDDVL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,747
Number of Sequences: 5004
Number of extensions: 19899
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)