Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P19
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    33   0.013
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    31   0.041
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   0.88 
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    26   1.5  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   2.7  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    25   2.7  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   3.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   3.5  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   8.2  
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    24   8.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   8.2  

>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 33.1 bits (72), Expect = 0.013
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
 Frame = +1

Query: 67  FYTYKKTDYGSRF-H*REYQNRNRI-YKE---YNDESRRREIPRFG 189
           F+TY K   GS+  H +E  N + I Y+E   ++DESR RE+ R G
Sbjct: 103 FFTYVKAWPGSKMDHFKEIHNESGIDYREMVFFDDESRNREVERLG 148


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.041
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +2

Query: 50  GNPINAFTLIKRLTMDLDFIEESIKIGTEYIKNITMNHEDVKYPALEDLTGAAQALTRLQ 229
           GN I   T       DL+ +E  +   T +   + + + D+ Y  LEDLTG + +L  L+
Sbjct: 635 GNEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLS-SLIHLR 693

Query: 230 E 232
           E
Sbjct: 694 E 694


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 269 FPRRDHVCPGDRSPVTWSVPVPRP 198
           FPRR    PGD+    W   V +P
Sbjct: 564 FPRRSVTVPGDKIDTVWKSSVTKP 587


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 107 IEESIKIGTEYIKNITMNHEDVKYPALEDLTGAAQALTRLQETYHLDI 250
           +EES K     +  IT +  +V YP  +D T   +AL R Q    + I
Sbjct: 15  LEESFKYALRVVFTITSDLGEVSYP--QDATVRVEALDRQQSHSRITI 60


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 245 DIRDLSEGMLNGVAYSTPMTASDCYQLGRTLYTHK 349
           +I   + G  N   +    T SDCY+L  T+ + K
Sbjct: 194 EISSNTTGAANATLFIDTQTKSDCYKLASTIESWK 228


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 40  KLFRKSHKCFYTYKKTDYGSRFH*REYQNRNRIYKEYNDESRRREIPRFGRPHGRGTGTD 219
           K +RK    ++  K  + G +F     +  +R Y+   DE +R    RFG    +G G D
Sbjct: 24  KAYRKLALKYHPDKNPNAGDKF-----KEISRAYEILADEEKRATYDRFGEEGLQGGGAD 78


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 2   QRKEHEIAMEDIPNYLGNPINAFTL-IKRLTMDLDFIEESIKIGTEYIKNITMNHEDVKY 178
           + ++ +IA+ D+P   G  I+ FTL + R +     I     IG + +   T   E  KY
Sbjct: 87  ENRKEDIAVFDVPLPNGLQIDTFTLCLYRKSKWKKQIVGEAYIGIQALLLSTNPDETCKY 146

Query: 179 PALEDLTG 202
           P +   +G
Sbjct: 147 PVISPPSG 154


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 314 CYQLGRTLYTHKDF 355
           CYQ+G T YT  DF
Sbjct: 539 CYQIGTTQYTDLDF 552


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +2

Query: 161 HEDVKYPALEDLTGAAQALTRLQETYHLDIRDLSEGMLNGVAYSTPMTASDCYQLGRTLY 340
           +E+  +P  +  +   +AL   +    LDI   SE + N    +  +  S  Y LG   +
Sbjct: 516 YENETHPLYQQSSQIIEALRLHKPLEELDIILQSEEIQNSETSAVRLVMSCAYSLGSRSF 575

Query: 341 TH 346
           +H
Sbjct: 576 SH 577


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 266 PRRDHVC--PGDRSPVTWSVPVPR 201
           PRR ++   P    P+TWS  +PR
Sbjct: 116 PRRGYMTLSPASTRPITWSFCLPR 139


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 257  LSEGMLNGVAYSTPMTASDCYQLGRTLYTH 346
            L + + +G+AY + +T+S+   + + LY H
Sbjct: 1644 LQQSLKHGIAYISEITSSNDQNIVQYLYRH 1673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,039
Number of Sequences: 5004
Number of extensions: 26813
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)