Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P19
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 30 0.63
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 29 0.83
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 29 0.83
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 29 1.5
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 28 1.9
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 27 4.4
08_02_1555 + 27849691-27849840,27850851-27850973 27 5.9
06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033 27 5.9
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 26 7.7
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 26 7.7
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 26 7.7
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 26 7.7
03_03_0209 - 15461255-15461542,15461666-15461764,15461868-154619... 26 7.7
01_07_0262 + 42378465-42378634,42379100-42379230,42379307-423794... 26 7.7
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 29.9 bits (64), Expect = 0.63
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 118 YQNRNRIYKEYNDESRRREIPRFGRPHGRGTG--TDQVTG 231
+Q++ RI ++ +RE+PR P RGTG DQ+ G
Sbjct: 16 HQDQPRIGDANGEDPEQRELPRQATPPPRGTGDLRDQING 55
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 29.5 bits (63), Expect = 0.83
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 256 ITYVQVIGLL*PGQCL-CRAREVFQSGVFHVFVIHRYILYI 137
I YVQ GL+ PG L + + +GVF+V + RY +Y+
Sbjct: 151 IRYVQASGLIGPGSVLFSKVLQFVHNGVFYV-IEQRYAMYL 190
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 29.5 bits (63), Expect = 0.83
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 179 PALEDLTGAAQALTRLQETYHLDIRDLSEGMLNGVAYSTPMTA 307
PA+ED+ + Q + RLQE LD D+S LN V P T+
Sbjct: 859 PAMEDVVWSLQFVARLQEVDGLDASDVSS--LNMVHQLMPPTS 899
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 74 LIKRLTMDLDFIEESIKIGTEYIKNITMNHEDVKYPALEDLTGAAQ 211
+ K + + + + I + EY+K++ ++ E +KY +E + G Q
Sbjct: 308 VFKMVEEETEVAKTQIILAREYLKDVAISTEQLKYLVMEAIRGGCQ 353
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 98 LDFIEESIKIGTEYIKNITMNHEDVKYPALEDLTGAAQALTRLQETYHLDIRD 256
L+ +EES+ + +YIK+I + ++ EDL A ++ E LDIR+
Sbjct: 953 LNSLEESLLVQGDYIKSIHV----LRISDCEDLEAAPLVFEQMNELRELDIRN 1001
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 40 KLFRKSHKCFYTYKKTDY 93
K FR S +CFY YK + Y
Sbjct: 320 KRFRLSKRCFYNYKHSGY 337
>08_02_1555 + 27849691-27849840,27850851-27850973
Length = 90
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 106 H*REYQNRNRIYKE 147
H +E+Q RNRIYKE
Sbjct: 47 HSKEFQRRNRIYKE 60
>06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033
Length = 472
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 239 HLDIRDLSEGMLNGVAYSTPMTASDCY 319
HL + + +G+++ +A ST +T S+C+
Sbjct: 286 HLSLSNCQDGLIDVIAKSTGVTISNCH 312
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 26.2 bits (55), Expect = 7.7
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 128 GTEYIKNITMNHEDVKYPALEDLTGAAQALTRLQETYHLDIRDLSEGMLNGVAYSTPMTA 307
G ++I +N ED ++ L + Q+ R + +I+ +++G + + TP+
Sbjct: 149 GEDHILTPQLNTEDTEHLPL--VKSVYQSAIRGNSPFQ-NIKSINDGSSDS-PFHTPLVL 204
Query: 308 SDCYQLGRTLYT-HK 349
D Q RT+YT HK
Sbjct: 205 RDDMQTPRTVYTSHK 219
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 98 LDFIEESIKIGTEYIKNITMNHEDVK 175
LD I I IG EY+ N+ + H D+K
Sbjct: 630 LDIIR-GIAIGVEYLHNVKVIHRDLK 654
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 151 NDESRRREIPRFGRPHGRGTGTD 219
N RRR R G P GRG G D
Sbjct: 398 NHRGRRRGGERLGAPDGRGIGGD 420
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 41 NYLGNPINAFTLIKRLTMDLDFIEES 118
NY NPI A +++ L + DF++ES
Sbjct: 304 NYDSNPIFAEEILRDLRLPSDFVDES 329
>03_03_0209 -
15461255-15461542,15461666-15461764,15461868-15461972,
15462076-15462168,15462276-15462368,15462453-15462506,
15463759-15463833,15464810-15464929
Length = 308
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 104 FIEESIKIGTEYIKNITMNHEDVKYP 181
FIE +KI E+++ MNH +K+P
Sbjct: 34 FIERGLKID-EHVQREIMNHRSLKHP 58
>01_07_0262 +
42378465-42378634,42379100-42379230,42379307-42379466,
42379547-42379850,42379936-42380037,42380583-42380606
Length = 296
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 68 FTLIKRLTMDLDFIEESIKIGTEYIKNITMNH 163
+ L+ L M+L+F+ + +IGT IK++ ++H
Sbjct: 138 YMLVDHLAMNLEFLANTQQIGT--IKDVILDH 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,041,333
Number of Sequences: 37544
Number of extensions: 168544
Number of successful extensions: 453
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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