Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P18
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 88 8e-19
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 78 1e-15
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 34 0.018
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 29 0.67
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 28 1.2
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 27 2.7
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 26 4.7
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 8.2
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 8.2
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 8.2
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 25 8.2
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 88.2 bits (209), Expect = 8e-19
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Frame = +2
Query: 17 YVIIVKVIGPKFMENRKPFELKKVLIWYNLFQVIFS---IWLFYESIASGWFTTYSFRCQ 187
YVII+ G M NRKP + +++ +N I S + L E + + F C
Sbjct: 66 YVIILS--GRAIMTNRKPLKQRRLFQLHNFILTIISGALLALLVEEVFRNYMRNGLFYC- 122
Query: 188 PVDYSRSPEVMRTVSGCWWYYFSKFTEFFDTIFFVMRKKFDQVSKLHVIHHGIMPMSVWF 367
V SR R V+ + Y +K+ E DT+F ++KK ++ LH HHGI + +
Sbjct: 123 -VCDSRH-FTQRLVTLYYLNYLTKYLELMDTVFLFLKKK--PLAFLHCYHHGITALLCFT 178
Query: 368 GVKFTPGGHSTFFGM--LNTFVHIIMYSYYLLAALGTNVQKYLWWKKYLTALQMVQFILV 541
+ G S +G+ LN +VH+IMYSYY LAA G V WWK+++T +Q++QF+L
Sbjct: 179 QLL---GRTSVQWGVIGLNLYVHVIMYSYYFLAACGRRV----WWKQWVTRVQIIQFVLD 231
Query: 542 FI 547
I
Sbjct: 232 LI 233
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 77.8 bits (183), Expect = 1e-15
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 3/177 (1%)
Frame = +2
Query: 11 LTYVIIVKVIGPKFMENRKPFELKKVLIWYNL-FQVIFSI--WLFYESIASGWFTTYSFR 181
++Y +++ ++G + M NR+P L+K+ +YNL F + +I L +E +A + + F
Sbjct: 43 ISYYLLI-LVGGRIMRNRQPIRLQKIFQYYNLTFSIASAILALLIFEQVAPAIY-KHGFF 100
Query: 182 CQPVDYSRSPEVMRTVSGCWWYYFSKFTEFFDTIFFVMRKKFDQVSKLHVIHHGIMPMSV 361
+ + + + C Y SKF E DT F V+RKK + LH HHG + V
Sbjct: 101 FSICNEKAWTQPLVFLYYC--AYISKFLELTDTFFLVLRKK--PLQFLHCYHHGATAVLV 156
Query: 362 WFGVKFTPGGHSTFFGMLNTFVHIIMYSYYLLAALGTNVQKYLWWKKYLTALQMVQF 532
+ + S +N VH+ MY YY L A G V WKK++T Q+VQF
Sbjct: 157 YTQI-VGRTSISWLIIEINLLVHVTMYYYYYLVAKGIRVP----WKKWVTRFQIVQF 208
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 33.9 bits (74), Expect = 0.018
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 107 FQVIFSIWLFYES---IASGWF-TTYSFRCQPVDYSRSPEVMRTVSGCWWYYFSKFTEFF 274
F+ IF ++LFY + I SG+F + SF P + G WWY+F++ F
Sbjct: 204 FRQIFVVFLFYLAGLIITSGFFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFFTEMFNEF 263
Query: 275 DTIF 286
T F
Sbjct: 264 RTFF 267
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 28.7 bits (61), Expect = 0.67
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +2
Query: 47 KFMENRKPFELKKVLIWY--NLFQVIFSIWLFYESIASGWFTTYSFRCQPVDYSRSPEVM 220
KF+ K KK L+ L++ + + LF +S WFTTY F D++ + +
Sbjct: 250 KFVHIEKSMGWKKELLGLVQTLYKEYWVLLLFPMFFSSNWFTTYQFN----DFNLAYFNI 305
Query: 221 RTVS-GCWWYYFSKFTEFFDTIFFVMRKKFDQVSKLHV 331
RT S Y+F++ F+ ++F++V + V
Sbjct: 306 RTRSLNNLLYWFAQIMGSAVAALFLDWQRFNRVIRARV 343
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = -1
Query: 478 DISAQSSQQIVRIHNDMDEGVEHAKERRMTTRCEFNSKPY*HRHNTMMNYVKFRHL 311
D+ + Q+VR +D T+ + +S H+H + +Y++F+H+
Sbjct: 89 DVCVAAPTQLVRSCDDYANSASTLVTNDDGTKTKVDSDEKKHKHKNVRDYIRFKHV 144
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 17 YVIIVKVIGPKFMENRKPFELKKVLI 94
++ + KV+ PKF+EN+ F +++LI
Sbjct: 375 FIYLRKVMIPKFVENKGKFPAEEILI 400
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 323 LHVIHHGIMPMSVWFGVK 376
LHV H ++ ++ WFGVK
Sbjct: 168 LHVGHKVLLTLTAWFGVK 185
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +2
Query: 392 HSTFFGMLNTFVHIIMYSYYLL 457
+S +FG L+++ +++M YYL+
Sbjct: 202 NSPYFGTLSSYGYVLMVLYYLI 223
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 8.2
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 20 VIIVKVIGPKFMENRKPFELK-KVLIWYNLFQVIFSIWLFYESIASGWFTTYSFRC--QP 190
V ++ + PKF+E R FE++ K Y+ +FS + E + F T F C P
Sbjct: 1264 VPLINGLQPKFIELRNVFEVREKPSNIYSWVAFVFSA-IIVEIPFNLVFGTLFFLCWFYP 1322
Query: 191 VDYSRSPEVMRTVSGCWWYYFSKFTEFFDT 280
+ + + +G W + F +F T
Sbjct: 1323 IKFYKHIHHPGDKTGYAWLLYMFFQMYFST 1352
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 248 YFSKFTEFFDTIFF-VMRKKFDQVSKLHVIHHGIMPMSVWFGVKFTPGGHSTFFGMLNTF 424
Y+S F+ +I+F + + Q L +IH I P + F V+ T G FG+ +
Sbjct: 184 YYSTFSYRDMSIYFRCLFQAMQQTQTLGIIHRDIKPSNFLFDVR-TKHGVLVDFGLAERY 242
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 391 SFYVLWHAQHLRPYHYVFLLSVGCFG 468
SF+ + LRPY Y+F + V +G
Sbjct: 196 SFWGILGYYFLRPYSYIFAIGVALWG 221
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 8.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 142 EHSEWMVYHVQFSMP 186
E+S W VYH++ + P
Sbjct: 16 EYSRWTVYHIEVAFP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,355
Number of Sequences: 5004
Number of extensions: 57808
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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