Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P18
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         49   3e-06
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    29   2.7  
10_08_0171 + 15404117-15405598                                         28   4.8  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
 Frame = +2

Query: 245 YYFSKFTEFFDTIFFVMRKKFDQVSKLHVIHHG--IMPMSVWFGVK--FTPGGHSTFFGM 412
           +Y SK  E  DT+  ++ ++   ++ LHV HH   I    +W   +    P   +T    
Sbjct: 125 FYLSKVYELGDTLLILLGRR--PLTLLHVYHHAAVIAMCYLWLATRQSLMPIALAT---- 178

Query: 413 LNTFVHIIMYSYYLLAALGTNVQKYLWWKKYLTALQMVQFILVFIHAFQLLF 568
            N  VH+ MY YYL  +LG        WK+ +T LQ+ QF+  F  +  +L+
Sbjct: 179 -NAAVHVAMYGYYLCCSLGLRWPPR--WKRAVTELQIAQFLFSFAASAVMLW 227


>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = +2

Query: 398 TFFGMLNTFVHIIMYSYYLLAALGTNVQ-KYLWWKK-YLTALQMVQF 532
           TFF  L+ F+HI+ Y+    A +GT     +LW+++ YL + +++QF
Sbjct: 534 TFFYKLSFFLHILDYT----ATIGTLTDLGFLWFREFYLESSRVIQF 576


>10_08_0171 + 15404117-15405598
          Length = 493

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
 Frame = +1

Query: 277 HNILRDAQKI*SSVETSRNSSWYYAYVSMVWS*IHTG-----WSFYVLWHAQHLRPY--H 435
           H + R++ ++   +E +        Y+S++ + +H G     WSF+    AQ LRP+  H
Sbjct: 281 HGMSRESLQMFQKMEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEH 340

Query: 436 YVFLLSV-GCFGH*CPEIPVVEEIPNRSS 519
           Y  L+ V G  G       VV+ +P + S
Sbjct: 341 YACLVDVLGRAGRLEEAYGVVKSMPMKPS 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,100,573
Number of Sequences: 37544
Number of extensions: 338082
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)