Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P17
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   7.2  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    24   7.2  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    24   9.5  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   9.5  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    24   9.5  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 265 VFHYFIILHLL*VIFNVNNILIKIDNFLMFKQNNL 369
           +F YFI + LL V+F+    +  I    + +QN L
Sbjct: 202 LFTYFISIFLLYVLFSSTKSIADIRQSYLARQNRL 236


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 31  LNNSSQIVFIK*HRVTKSLRSLEI 102
           +N SSQIV ++ H + KS RSL +
Sbjct: 161 INPSSQIVSVRFHPLGKSGRSLVV 184


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 265 VFHYFIILHLL*VIFNVNNILIKIDNF 345
           +F +FIIL  L VIF V NI I   +F
Sbjct: 428 LFVFFIILVCLAVIFYVFNIRIHWSDF 454


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 241 NIIETIDTVCVP-AHDALH--FTNCACNPRPSLRPRKRHTWFPYFALILQSPVTATTLLL 71
           N++E  D +C     D L   F+N   +      P    T+F YFA+ L   V  T +LL
Sbjct: 264 NVLEIADRLCCALGQDVLDCLFSNHILSFN-FWNPAGWMTFFYYFAISLAYMVLHTLVLL 322

Query: 70  YVI 62
           Y I
Sbjct: 323 YQI 325


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 250 YFANIIETIDTVCVPAHDALHFTNCACN 167
           Y  N I       +P H + H T+C  N
Sbjct: 28  YLVNFISCPSIHSIPFHISTHLTSCQAN 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,000
Number of Sequences: 5004
Number of extensions: 27060
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)