Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P17
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143...    27   7.0  
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    26   9.2  
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    26   9.2  
03_05_0208 + 22006032-22006673,22006695-22007078                       26   9.2  
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514...    26   9.2  

>08_02_0512 +
           18012909-18013025,18013656-18013751,18014102-18014389,
           18014551-18014750,18015313-18015548,18015809-18015951,
           18016059-18016130,18016231-18016458
          Length = 459

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 196 ALHFTNCACNPRPSLRP 146
           AL F  C C  RPSLRP
Sbjct: 4   ALAFPTCCCCRRPSLRP 20


>10_08_0343 -
           16960764-16960895,16961166-16961171,16961272-16961640,
           16962118-16962304,16962567-16962759,16962864-16963137,
           16963215-16963374,16963985-16964199,16964784-16964876,
           16965192-16965260,16965293-16965445,16965534-16965737,
           16966416-16966691,16967336-16967431,16967585-16967788,
           16967877-16968069,16968229-16968374,16968771-16969425,
           16971462-16971774,16971989-16972139,16972602-16973815,
           16973933-16974182,16974784-16975035
          Length = 1934

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 175 ACNPRPSLRPRKRHTWFPYFAL 110
           A  P PS +P++ H+ FP F L
Sbjct: 763 AHGPNPSAQPKRLHSSFPVFPL 784


>05_03_0460 -
           14294931-14295110,14295200-14295234,14295358-14295457,
           14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 237 MLAK*FQQKCISLFYYITFIISN 305
           M+ K F+    SL Y+I F+ISN
Sbjct: 746 MVTKGFELDTFSLLYFINFLISN 768


>03_05_0208 + 22006032-22006673,22006695-22007078
          Length = 341

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 239 HYRNY--RYGMRTGARRTSLYELCLQPAPLLTPPK 141
           HYR Y  RYG    A R  +    L+P   LT P+
Sbjct: 222 HYRGYQWRYGEVDNAARARMVSRPLEPCRALTAPE 256


>01_01_0672 +
           5147916-5147976,5148087-5148166,5148329-5148973,
           5149111-5149341
          Length = 338

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 237 LSKLSIRYAYRRTTHFTLRTVPATRAPPYAPENDTHGSHTL 115
           L+K+ +   YRR  ++  +   A  A P  P  +    HT+
Sbjct: 197 LAKMHMETTYRRRQYYYQQAAAAAEAAPPPPSGNNQLQHTM 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,124,246
Number of Sequences: 37544
Number of extensions: 170492
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)