Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P17
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr...    26   8.2  
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr...    26   8.2  
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ...    26   8.2  
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ...    26   8.2  
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ...    26   8.2  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    26   8.2  

>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
           protein F28E10.1a protein.
          Length = 1134

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 246 SLTLSKLSIRYAYRRTTHFTLRTVPATRAPP 154
           S+  S  S  Y Y RT H TL  +P+ R PP
Sbjct: 15  SIIRSSSSGSYPYPRT-HTTLMVIPSNRPPP 44


>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical protein
            F36H2.1c protein.
          Length = 1071

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 136  HTWFPYFALILQSPVTATTLLLYVI**TQFGKNCLIRLRYLC 11
            +T  P F+L++   VTAT  L Y     + GK   +  +  C
Sbjct: 909  YTMLPVFSLVVDRDVTATNALTYPELYKELGKGRSLSYKTFC 950


>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 136 HTWFPYFALILQSPVTATTLLLYVI**TQFGKNCLIRLRYLC 11
           +T  P F+L++   VTAT  L Y     + GK   +  +  C
Sbjct: 873 YTMLPVFSLVVDRDVTATNALTYPELYKELGKGRSLSYKTFC 914


>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical protein
            F36H2.1a protein.
          Length = 1074

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 136  HTWFPYFALILQSPVTATTLLLYVI**TQFGKNCLIRLRYLC 11
            +T  P F+L++   VTAT  L Y     + GK   +  +  C
Sbjct: 912  YTMLPVFSLVVDRDVTATNALTYPELYKELGKGRSLSYKTFC 953


>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
            protein F36H2.1c protein.
          Length = 1071

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 136  HTWFPYFALILQSPVTATTLLLYVI**TQFGKNCLIRLRYLC 11
            +T  P F+L++   VTAT  L Y     + GK   +  +  C
Sbjct: 909  YTMLPVFSLVVDRDVTATNALTYPELYKELGKGRSLSYKTFC 950


>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 136 HTWFPYFALILQSPVTATTLLLYVI**TQFGKNCLIRLRYLC 11
           +T  P F+L++   VTAT  L Y     + GK   +  +  C
Sbjct: 873 YTMLPVFSLVVDRDVTATNALTYPELYKELGKGRSLSYKTFC 914


>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
            protein F36H2.1a protein.
          Length = 1074

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 136  HTWFPYFALILQSPVTATTLLLYVI**TQFGKNCLIRLRYLC 11
            +T  P F+L++   VTAT  L Y     + GK   +  +  C
Sbjct: 912  YTMLPVFSLVVDRDVTATNALTYPELYKELGKGRSLSYKTFC 953


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 258 VEII-SLTLSKLSIRYAYRRTTHFTLRTV 175
           VE++ +L+  +LS +   RRT H+T RTV
Sbjct: 274 VEVVETLSTEQLSNKTRNRRTRHYTTRTV 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,323,392
Number of Sequences: 27780
Number of extensions: 157985
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)