Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P16
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0379 - 8210401-8210567,8210944-8213827                           28   5.3  
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980...    28   5.3  

>09_02_0379 - 8210401-8210567,8210944-8213827
          Length = 1016

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 51  CILWRQDFSVQNINVI 98
           C+LW QD+S+ NI+++
Sbjct: 406 CVLWPQDYSIWNIDLV 421


>02_04_0473 +
           23197294-23197340,23197443-23197680,23197792-23198016,
           23198616-23198762,23198827-23198961,23199415-23199507,
           23199925-23200044,23200303-23200413,23200486-23200611,
           23200731-23200829,23201024-23201104
          Length = 473

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 104 VFYHVNILN*EILTPQYTIFSKCIE 30
           +F+H  I N +  TP + +  KCI+
Sbjct: 336 IFFHPEIYNNDFTTPLHVVIDKCIQ 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,457,749
Number of Sequences: 37544
Number of extensions: 196402
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)