Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P13
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710...    28   5.3  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   5.3  
09_03_0172 - 13072575-13073800,13075919-13076054                       27   7.1  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     27   7.1  

>07_02_0012 -
           11770058-11770770,11770919-11771000,11771064-11771072,
           11771630-11771877,11772006-11772183,11772270-11772278
          Length = 412

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 176 ELAKKMEDTKQKPEARPKKERP 241
           E A +M+D K++PE + KKE P
Sbjct: 273 EEADQMKDQKEEPEEKEKKEEP 294


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 411 PVSGAKSSEIRSRPASGTPLPPCNTWILSP 322
           P+   K   I S P  GTP PPC   +L P
Sbjct: 476 PIKRKKGKHIDSTP--GTPCPPCQEVVLVP 503


>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 169 CGELFHCLRLFTIFLCEKIVQIS-HVLILNNNSLVPVNYLAN 47
           CGELF       +   +K+VQI  H L L+    V VN + N
Sbjct: 344 CGELFMLSFKHPVVCAQKVVQIEVHKLDLSRRIWVKVNTIGN 385


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 347 GGSG--VPEAGRDLI-SDDFAPDTGKVNGPWNKPAESEPGAQ 463
           GG+G  VP A + +I SDD +   G V   W +P   E  A+
Sbjct: 544 GGAGRLVPAAAKVVIKSDDSSASNGSVEVEWRRPRFKEVSAE 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,355
Number of Sequences: 37544
Number of extensions: 203042
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)