Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P12
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 58 7e-10
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 55 6e-09
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 29 0.64
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 2.0
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 3.4
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 26 4.5
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 6.0
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 25 6.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 7.9
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 58.4 bits (135), Expect = 7e-10
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +2
Query: 8 GLISLEKKQRNSDLDRFWLDVVLLMIGENFE-NSEEICGAVVNVRAKLDKIGIWTADASK 184
G + + K + S+LD WL +VL IGE + +E+ G V N+R +I +WT + +
Sbjct: 139 GKWAYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCND 198
Query: 185 QHATIEIGRKIKDQLGIHGK--IGFQVHRDTMVKHSSATK 298
+ +IG + K+ LGI K I + H D+ S K
Sbjct: 199 KDVLEKIGLRFKEVLGISDKETIEYSAHEDSSKAGSMRAK 238
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 55.2 bits (127), Expect = 6e-09
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Frame = +2
Query: 8 GLISLEKKQRNSD-LDRFWLDVVLLMIGENFE-NSEEICGAVVNVRAKLDKIGIWTADAS 181
G + + K R + LD WL VL IGE + +E+ G V+N+R ++ +WT +
Sbjct: 113 GKWAFQNKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCN 172
Query: 182 KQHATIEIGRKIKDQLGI--HGKIGFQVHRDTMVKHSSATKNLYTV 313
+ +EIG + K L + I F H D+ S+ K +V
Sbjct: 173 NREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGSTRAKTRMSV 218
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 28.7 bits (61), Expect = 0.64
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 461 YMKLSNTLENFMKVCIKFVSSVYKALKIYLFKSVS*TC 348
Y+KL NT ++C K ++ + LKIY FK C
Sbjct: 477 YLKLDNTERYTFEICWKSAKTIVQLLKIY-FKKYDADC 513
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 470 RQIYMKLSNTLENFMKVCIKFVSSVYKALK 381
RQ M+LSN+L+N +K I + SV K L+
Sbjct: 1023 RQKIMQLSNSLQNELKEHINSLESVRKVLQ 1052
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 280 LDHSVSVHLETDLPVDPELIFYL 212
LDH+VS +DLP DP Y+
Sbjct: 199 LDHAVSSSSSSDLPSDPNSASYI 221
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 144 FALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCF 28
+A T + ++ F+ FSP+ R S + LRCF
Sbjct: 153 YASTERSYKELPLRFADFSPLHRNEASGALSGLTRLRCF 191
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 6.0
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -1
Query: 183 FEASAVQIPILSNFALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCFFSKLMSPS 4
F +S +I LTL+T+P E S S I R SN + + + FS L S S
Sbjct: 372 FSSSTAEIDPYHFQGLTLSTSPISGVESSSLSSAISRNQSNLSSFQQQQQ--FSALQSIS 429
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 211 EDKRSARDPREDRFPSAQRH-YGQAQFCYKESL 306
E K S+R+P+ FP H +GQ +F E L
Sbjct: 270 EAKASSRNPKPFEFPDGVTHKFGQERFRISEIL 302
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 158 GIWTADASKQHATIEIGRKIKDQL 229
GIW+ DASK H I I +K ++
Sbjct: 758 GIWSKDASKHHREI-ISLNVKQKM 780
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 74 LLMIGENFENSEEICGAVVNVRAKLDKIGIWTADA 178
+++ G+N ENSEE N +G+ A
Sbjct: 55 MMITGDNVENSEEALNLATNYECFTSTVGVHPCQA 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,886
Number of Sequences: 5004
Number of extensions: 43787
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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