Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P12
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 80 1e-15
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 73 1e-13
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 56 2e-08
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188... 31 0.66
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 30 1.5
10_08_0344 + 16978501-16978664,16978685-16978746,16979922-169800... 28 6.1
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 28 6.1
08_01_0326 + 2928668-2928821,2931530-2931741,2931835-2931927,293... 27 8.1
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 27 8.1
02_05_0337 - 28060009-28060716,28061055-28061498,28061732-280617... 27 8.1
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995... 27 8.1
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = +2
Query: 50 DRFWLDVVLLMIGENFENSEEICGAVVNVRAKLDKIGIWTADASKQHATIEIGRKIKDQL 229
D WL +L MIGE F+ +EICGAVV+VR K ++I IWT +A+ + A I IG++ K+ L
Sbjct: 141 DTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFL 200
Query: 230 GIHGKIGFQVHRDTMVKHSSATK 298
IGF VH D + K+ ++
Sbjct: 201 DYKDSIGFIVHWDILSKYEDMSE 223
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/78 (38%), Positives = 49/78 (62%)
Frame = +2
Query: 35 RNSDLDRFWLDVVLLMIGENFENSEEICGAVVNVRAKLDKIGIWTADASKQHATIEIGRK 214
R + L+ WL+ ++ +IGE F+ SEEICG V +VR + DK+ +WT AS + + IG+K
Sbjct: 115 RKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKK 174
Query: 215 IKDQLGIHGKIGFQVHRD 268
K+ + + K+ + H D
Sbjct: 175 WKEIVDYNDKMVYSFHDD 192
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 53 RFWLDVVLLMIGENFENSEEICGAVVNVRAKLDKIGIWTADASKQHATIEIGRKIKDQLG 232
RFW D+VL+++G+ + S+++CG V++VR D + +W +AS A + + IK L
Sbjct: 139 RFWEDLVLVLVGDQLDYSDDVCGVVLSVRFNEDILSVWNRNASDHQAVMTLRDSIKRHLK 198
Query: 233 I-HGKIGFQVHRDTMVKHSSATKNLY 307
+ H + D ++ +S+ +N +
Sbjct: 199 LPHSYLMEYKPHDASLRDNSSYRNTW 224
>03_02_0768 +
11015855-11016063,11016285-11016359,11018296-11018833,
11019356-11020465
Length = 643
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 68 VVLLMIGENFENSEEICGAVVNVRAKLDKIGIWTADASKQHATIE 202
V+L+M+ E+ E E + V V AKLD + T + SK+ T+E
Sbjct: 13 VMLVMVDEDVELWEALEKGDVTVEAKLDGVEYRTMELSKEDRTVE 57
>03_05_0487 +
24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 98 ENSEEICGAVVNVRAKLDKIGIWTADASKQHATIEIGRKIKDQLGIHGKIGFQVHRDTMV 277
EN EEI AV+ AK+ G W ++ R+++ Q+ ++ ++G V RD +
Sbjct: 588 ENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVG--VVRDIRL 645
Query: 278 K 280
K
Sbjct: 646 K 646
>10_08_0344 +
16978501-16978664,16978685-16978746,16979922-16980071,
16981131-16981276
Length = 173
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 147 NFALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCFFSKLMSPSC 1
+F L + T P + SE+ S ++R T K + +L F ++ SP+C
Sbjct: 49 SFYLPILTGPILKSEYCSASFAVQRLTV-LKEDQMDLSFFHAQSKSPAC 96
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 159 PILSNFALTLTTAPQISSEFSKFSPIIRRTTS 64
P+ N L+L +P+I S +KF P I TS
Sbjct: 89 PLYQNVPLSLALSPRIFSAVAKFKPDIIHATS 120
>08_01_0326 +
2928668-2928821,2931530-2931741,2931835-2931927,
2931997-2932119,2933372-2933650
Length = 286
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 156 ILSNFALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCFFSKLMSPS 4
I NF +T T Q++S K+ +R+T N+K+ +S L + MSP+
Sbjct: 78 ISKNF-VTTRTPTQVASHAQKY--FLRQTNPNKKKRRSSLFDMMATDMSPA 125
>04_04_1571 +
34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 47 LDRFWLDVVLL-MIGENFENSEEICGAVVNVRAKLDKIGIWTADASKQH 190
+D F +D V +GE FE V + + L KIGI+ A+K +
Sbjct: 287 IDSFSMDFVSKSFLGEKFEKKSYTYFIVQGMASALSKIGIFATTAAKDY 335
>02_05_0337 -
28060009-28060716,28061055-28061498,28061732-28061793,
28061896-28062007,28062144-28062263
Length = 481
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 186 STPLSKSVGR*KISSGSTGRSVSKCTETLWSSTVLLQRIFTPYSRC 323
++ +++S G+ + ++KC + +S LLQR F PY RC
Sbjct: 410 NSDVAESRGQGNSREAAASPRLTKCESS--ASVTLLQRGFMPYKRC 453
>01_06_0684 +
31196825-31197252,31199189-31199291,31199402-31199512,
31199614-31199697,31199915-31199986,31200073-31200129,
31200427-31200546,31201301-31201324,31201953-31202063,
31202165-31202202,31202287-31202443,31202700-31202801,
31202878-31202934,31203113-31203259,31203429-31203499,
31203582-31203669,31203810-31203866,31203996-31204193
Length = 674
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 298 ESLHRI--AAVIF*HNT*WHVYETDLKR*IFKALYTLETNFIQTFIKFSNVLLSFI*ICR 471
E LHR+ A V+ H W + T L + + L LE ++ I+ + V+L + ICR
Sbjct: 416 EELHRLVYAQVLCSHALTWQIAPTYLSSCLNQGLGLLEILLLKQPIQDNRVVLKTLEICR 475
Query: 472 I 474
+
Sbjct: 476 L 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,403
Number of Sequences: 37544
Number of extensions: 235730
Number of successful extensions: 516
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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