Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P12
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 84 6e-17
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 81 7e-16
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 80 1e-15
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 63 1e-10
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 63 1e-10
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 63 1e-10
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 62 4e-10
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 62 4e-10
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 46 1e-05
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 46 1e-05
AC024801-8|AAK95893.1| 285|Caenorhabditis elegans Hypothetical ... 33 0.11
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z75545-2|CAA99885.1| 327|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81575-5|CAB04631.2| 353|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z68215-3|CAA92452.3| 415|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 84.2 bits (199), Expect = 6e-17
Identities = 38/99 (38%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Frame = +2
Query: 11 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLDKIGIWTADASKQ 187
L+ ++K++R LD +WL++++ ++GE F E + ICGAVVNVR K DK+ +WT DA++
Sbjct: 109 LVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRD 168
Query: 188 HATIEIGRKIKDQLGIHGK--IGFQVHRDTMVKHSSATK 298
+ IG+ +K +L I + ++VH+D+ + SS K
Sbjct: 169 DVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 207
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 80.6 bits (190), Expect = 7e-16
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Frame = +2
Query: 11 LISLEKKQRNSDL-DRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLDKIGIWTADASK 184
++ +K QR + L D +WL++++ ++GE F E + ICGAVVNVR K DK+ +WT DA++
Sbjct: 111 VVDKQKLQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATR 170
Query: 185 QHATIEIGRKIKDQLGIHGK--IGFQVHRDTMVKHSSATK 298
+ IG+ +K +L I + ++VH+D+ + SS K
Sbjct: 171 DDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 210
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Frame = +2
Query: 11 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLDKIGIWTADASKQ 187
++ + ++R LD +WL++++ ++GE F E + ICGAVVNVR K DK+ +WT DA++
Sbjct: 111 VVDKQLQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRD 170
Query: 188 HATIEIGRKIKDQLGIHGK--IGFQVHRDTMVKHSSATK 298
+ IG+ +K +L I + ++VH+D+ + SS K
Sbjct: 171 DVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 209
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 63.3 bits (147), Expect = 1e-10
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Frame = +2
Query: 11 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLDKIGIWTADASKQ 187
LI + K + LD WL+++L +IGE F ++ E ICG V NVR + KI +WT + +
Sbjct: 86 LIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDD 145
Query: 188 HATIEIGRKIKDQL-----GIHGK-----IGFQVHRDTMVKHSSATKNLYTV 313
+ IG +K++L H K I +Q HR+ + K +SA K +++
Sbjct: 146 DTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRNCVKKTTSALKYKFSL 197
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 63.3 bits (147), Expect = 1e-10
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Frame = +2
Query: 11 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLDKIGIWTADASKQ 187
LI + K + LD WL+++L +IGE F ++ E ICG V NVR + KI +WT + +
Sbjct: 125 LIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDD 184
Query: 188 HATIEIGRKIKDQL-----GIHGK-----IGFQVHRDTMVKHSSATKNLYTV 313
+ IG +K++L H K I +Q HR+ + K +SA K +++
Sbjct: 185 DTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRNCVKKTTSALKYKFSL 236
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 63.3 bits (147), Expect = 1e-10
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Frame = +2
Query: 11 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLDKIGIWTADASKQ 187
LI + K + LD WL+++L +IGE F ++ E ICG V NVR + KI +WT + +
Sbjct: 86 LIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDD 145
Query: 188 HATIEIGRKIKDQL-----GIHGK-----IGFQVHRDTMVKHSSATKNLYTV 313
+ IG +K++L H K I +Q HR+ + K +SA K +++
Sbjct: 146 DTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRNCVKKTTSALKYKFSL 197
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +2
Query: 11 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLDKIGIWTADASKQ 187
LI ++K + +D WL++++ ++GE F ++ E ICG V NVR K KI +WT D +
Sbjct: 89 LIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDD 148
Query: 188 HATIEIGRKIKDQL 229
+ IG +K++L
Sbjct: 149 ETNMRIGVVLKEKL 162
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 11 LISLEKKQRNSDLDRFWLDVVLLMIGENFENS-EEICGAVVNVRAKLDKIGIWTADASKQ 187
LI++EK + +D W ++++ MIGE F + E +CG V NVR K KI +WT +++
Sbjct: 94 LITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADD 153
Query: 188 HATIEIGRKIKDQL 229
A + IG +K L
Sbjct: 154 GANLRIGGVLKQVL 167
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 53 RFWLDVVLLMIGENFENSEEICGAVVNVRAKLDKIGIWTADASKQHATIEIGRKIKD--Q 226
R W ++++ +IGE F +E+CGAV ++R + D I +W +A T I ++ Q
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQ 181
Query: 227 LGIHGKIGFQVHRDTMVKHSS---ATKNL 304
L + + ++ H D + SS TKN+
Sbjct: 182 LPQNTVLEYKRHDDCLRDQSSYRHTTKNI 210
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 53 RFWLDVVLLMIGENFENSEEICGAVVNVRAKLDKIGIWTADASKQHATIEIGRKIKD--Q 226
R W ++++ +IGE F +E+CGAV ++R + D I +W +A T I ++ Q
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQ 181
Query: 227 LGIHGKIGFQVHRDTMVKHSS---ATKNL 304
L + + ++ H D + SS TKN+
Sbjct: 182 LPQNTVLEYKRHDDCLRDQSSYRHTTKNI 210
>AC024801-8|AAK95893.1| 285|Caenorhabditis elegans Hypothetical
protein Y50D7A.9 protein.
Length = 285
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = -1
Query: 183 FEASAVQIPILSNFALTLTTAPQISSEFSKFSP-----IIRRTTSNQKRSKSELRCFFSK 19
F A + + L NF + P++ F P I+ TSN+K +++LR +F+K
Sbjct: 95 FRAQGLPLDTLKNFLQKMKDKPEVEYSFDIIGPSGIFLIVTAETSNKKAFENDLRKYFNK 154
Query: 18 L 16
L
Sbjct: 155 L 155
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 140 AKLDK-IGIWTADASKQHATIEIGRKIKD-QLGI 235
A DK + IW A K TI +G KI+D QLGI
Sbjct: 255 ASADKSVKIWDVSARKLERTIVMGSKIEDQQLGI 288
>Z75545-2|CAA99885.1| 327|Caenorhabditis elegans Hypothetical
protein K10D3.3 protein.
Length = 327
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -3
Query: 280 LDHSVSVHLETDLP-VDPELIFYLPTDFDSGVL 185
++ ++S+ ++ LP + P+++FYLP D S ++
Sbjct: 106 MEETISITQQSFLPQIKPQVVFYLPNDNTSTIV 138
>Z81575-5|CAB04631.2| 353|Caenorhabditis elegans Hypothetical
protein R08H2.5 protein.
Length = 353
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = -1
Query: 387 FKNLSF*ICLINVPLRIMSEYNSGYTV*RFFVAELCLTIVSLCTWKPIFPWIPS*SFIFL 208
F+ L+F + L P+ M + FF A+L + + +LC P++ IFL
Sbjct: 43 FQVLAFYVILYKTPVA-MKISKIPLLINHFFCAQLDVVLCTLC---PLY--------IFL 90
Query: 207 PISIVACCFEASAVQIPILSNFALTL 130
P+S V+C S + +P L ++ +
Sbjct: 91 PMSAVSCVGLLSWLGVPTLLQLSIII 116
>Z68215-3|CAA92452.3| 415|Caenorhabditis elegans Hypothetical
protein C53B4.3 protein.
Length = 415
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 219 FIFLPISIVACCFEASAVQIPILSNFALTLTTAPQISSEFSKFSPI 82
F+ L +S+VA C ++ + S + L TA ++S FSP+
Sbjct: 325 FVSLGMSVVATCADSLLTALVDESEQGIVLGTATSLNSLVRTFSPL 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,096
Number of Sequences: 27780
Number of extensions: 238162
Number of successful extensions: 665
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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