Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P12
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 304  KILCSRTVLDHSVSVHLETDLPVDP 230
            ++L    V    VS++L++DLPV+P
Sbjct: 967  QLLTHYLVSKDGVSLNLDSDLPVEP 991


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 298 LCSRTVLDHSVSVHLETDLPVDPELIFYLPTDFDSGVLL 182
           LC R   +      L+ DL    +  FY  T F  G++L
Sbjct: 276 LCQRRFEEQGNYSCLKVDLIFTRDRAFYFTTVFIPGIIL 314


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 394 YTLETNFIQTFIKFSNVLLSFI*ICRINFIASSFYND*NN*LFYLTRGSYI*VSYS 561
           Y  E N++   +   NVL++   +C+I     S   +      Y TRG  I V ++
Sbjct: 750 YLAEMNYVHRDLAARNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRWT 805


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 393 IHTRDKFYTDFHKVLQCVTKFHI 461
           +H RD    D +K  QC TK  +
Sbjct: 165 LHIRDVGPEDGYKTYQCRTKHRL 187


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 111 SSEFSKFSPIIRRTTSNQKRSKS---ELRCFFSK 19
           SSEFSK S + R T+   ++  +   EL+  F++
Sbjct: 3   SSEFSKISKVDRSTSPLPRKPVNPVQELKALFAE 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,613
Number of Sequences: 438
Number of extensions: 2908
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)