Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P11
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   2.7  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    24   8.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    24   8.2  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    24   8.2  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 177 IIRFASLYKKSFTLLFVAIAITSCMFISL 91
           +IRF SLY++     +    + SC+F+S+
Sbjct: 370 LIRFPSLYEQLKKPRYTVCFVVSCIFVSI 398


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 168 FASLYKKSFTLLFVAIAITSCMFISL 91
           F + YK   +++   I +T C+F+SL
Sbjct: 519 FMNSYKMKLSIILGVIHMTFCLFLSL 544


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 263  NHLRVMRNLKAILTAPRQFDSWSLSAHPL*FVSLPYI 153
            N ++ MRNL  IL   +Q +   L  +PL F   P I
Sbjct: 923  NRIKKMRNLCDILANLKQLNVLDLRMNPLNFNIYPVI 959


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 294 SPPNLMNPLVQPPPGNAELKSNSDSPSSI*LVVPFSSSFIIRFASLYKKS 145
           S  N+  PL +P PG     S  + PS+  L    S  F  +  +  K+S
Sbjct: 376 SQSNISTPLPEPTPGQPRKVSGHNPPSARRLPSASSVKFNEKLKNASKQS 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,691
Number of Sequences: 5004
Number of extensions: 21287
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)