Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P11
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 294 SPPNLMNPLVQPPPGNAELKSNSDSPSSI*LVVPFS 187
           SPPN   P   PPPG       S +PS + ++ P S
Sbjct: 38  SPPN---PSQGPPPGGPPGAPPSQNPSQM-MISPAS 69


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 159 LYKKSFTLLFVAIAITSCMFI 97
           L+K+ F+   + I I  CM +
Sbjct: 236 LFKREFSYYLIQIYIPCCMLV 256


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 159 LYKKSFTLLFVAIAITSCMFI 97
           L+K+ F+   + I I  CM +
Sbjct: 236 LFKREFSYYLIQIYIPCCMLV 256


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -3

Query: 306 CSIHSPPNLMNPLVQPPPGNAELKSNSDSPS 214
           C +H  P L      P       +SNS SPS
Sbjct: 347 CPLHCKPELGQSQSSPKFVARREESNSSSPS 377


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +3

Query: 336 HNLNNNQILYQ 368
           H+L+++Q+LYQ
Sbjct: 74  HHLHHHQVLYQ 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,234
Number of Sequences: 438
Number of extensions: 1567
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)