Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P10
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...   107   5e-24
07_03_1145 + 24335746-24336299,24336967-24337105,24337634-243376...    42   3e-04
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877...    32   0.17 
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882...    27   4.8  

>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
            48730-48840,48935-49195,49415-49638,49735-49855,
            50673-51214,51302-51488,51569-51895,52047-52197,
            52287-52424,52918-53013,53276-53357,54411-54679,
            54769-54882,55050-55288,55488-55715,55799-55951,
            56479-56616,57061-57188,57598-57718,58142-58306,
            59486-59633,59772-59898,60025-60118,60119-60268,
            60577-60624,60712-60819,61040-61114,61225-61275,
            61341-61487,61584-61714,61944-62031,62204-62266,
            62336-62582,62830-62981,63056-63126,63214-63370,
            63520-63687
          Length = 2323

 Score =  107 bits (256), Expect = 5e-24
 Identities = 49/110 (44%), Positives = 73/110 (66%)
 Frame = +2

Query: 5    RQFQGLSVSAERWIDIEELRPGGTLKEYLMRKKTEGYTLVAAEQTSTSCNXXXXXXXXXX 184
            +QF+ +SV+AE+W+ + E+ P  ++K +L +K+ EGY+++  EQT+ S            
Sbjct: 2210 KQFRLISVTAEKWLPMMEV-PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKT 2268

Query: 185  XXXXGHEKEGVPCDLLPIMDYCVEIPQQGFVRSLNVHVTAAIFMWEYARQ 334
                G EKEG+P D++ ++D CVEIPQ G VRSLNVHV+ AI +WEY RQ
Sbjct: 2269 VLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 2318


>07_03_1145 +
           24335746-24336299,24336967-24337105,24337634-24337695,
           24338140-24338278,24338692-24338829
          Length = 343

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 29/104 (27%), Positives = 42/104 (40%)
 Frame = +2

Query: 5   RQFQGLSVSAERWIDIEELRPGGTLKEYLMRKKTEGYTLVAAEQTSTSCNXXXXXXXXXX 184
           R  + +S+ AE+W+DIE      +  E     K  GY +      + S            
Sbjct: 187 RDNRHVSMGAEKWLDIE---LWSSTAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPT 243

Query: 185 XXXXGHEKEGVPCDLLPIMDYCVEIPQQGFVRSLNVHVTAAIFM 316
               G+E  G+  D L + D    +P +G V S NV V A I M
Sbjct: 244 AIVVGNELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGILM 287


>10_05_0068 +
           8774712-8774787,8774812-8774852,8774895-8775743,
           8776210-8776582,8776814-8777484
          Length = 669

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 38  RWIDIEELRPGGTLKEYLMRKKTEGYT 118
           +W+  ++LRP GT+K+Y  R   +GYT
Sbjct: 400 KWVFKKKLRPDGTIKKYKARLVAKGYT 426


>09_04_0660 -
           19286653-19287271,19287791-19287916,19288016-19288221,
           19288417-19288549,19288632-19288713,19288906-19289035,
           19289187-19289279,19289391-19289510,19289594-19289660,
           19290079-19290137,19290719-19290943
          Length = 619

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 146 WLMFVLRR-LGYSPRFFFSSG 87
           WL+F+  R LGYS  FF+ +G
Sbjct: 457 WLVFIAHRVLGYSSGFFYGAG 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,196
Number of Sequences: 37544
Number of extensions: 227793
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)