Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P10
         (426 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38847-1|AAC50379.1| 1621|Homo sapiens TAR RNA loop binding prot...   122   7e-28
AL355472-5|CAI22931.1| 1621|Homo sapiens Tar (HIV-1) RNA binding...   122   7e-28
AL136124-1|CAI22828.1| 1621|Homo sapiens Tar (HIV-1) RNA binding...   122   7e-28
BX538101-1|CAD98016.1|  672|Homo sapiens hypothetical protein pr...    29   8.7  
BX538016-1|CAD97963.1|  673|Homo sapiens hypothetical protein pr...    29   8.7  
BC042753-1|AAH42753.1|  673|Homo sapiens zinc finger and BTB dom...    29   8.7  
AL833604-1|CAD91170.1|  673|Homo sapiens hypothetical protein pr...    29   8.7  
AC002086-1|AAB54087.1|  672|Homo sapiens WUGSC:H_DJ525N14.1 prot...    29   8.7  

>U38847-1|AAC50379.1| 1621|Homo sapiens TAR RNA loop binding protein
            protein.
          Length = 1621

 Score =  122 bits (293), Expect = 7e-28
 Identities = 55/113 (48%), Positives = 78/113 (69%)
 Frame = +2

Query: 5    RQFQGLSVSAERWIDIEELRPGGTLKEYLMRKKTEGYTLVAAEQTSTSCNXXXXXXXXXX 184
            +QFQ LSVSAE+W+ + E++P   L +YL +KKTEGYT++  EQT+ S +          
Sbjct: 1503 KQFQHLSVSAEQWLPLVEVKPP-QLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKS 1561

Query: 185  XXXXGHEKEGVPCDLLPIMDYCVEIPQQGFVRSLNVHVTAAIFMWEYARQNIL 343
                G+E+EG+P +L+  +D CVEIPQQG +RSLNVHV+ A+ +WEY RQ +L
Sbjct: 1562 LLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLL 1614


>AL355472-5|CAI22931.1| 1621|Homo sapiens Tar (HIV-1) RNA binding
            protein 1 protein.
          Length = 1621

 Score =  122 bits (293), Expect = 7e-28
 Identities = 55/113 (48%), Positives = 78/113 (69%)
 Frame = +2

Query: 5    RQFQGLSVSAERWIDIEELRPGGTLKEYLMRKKTEGYTLVAAEQTSTSCNXXXXXXXXXX 184
            +QFQ LSVSAE+W+ + E++P   L +YL +KKTEGYT++  EQT+ S +          
Sbjct: 1503 KQFQHLSVSAEQWLPLVEVKPP-QLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKS 1561

Query: 185  XXXXGHEKEGVPCDLLPIMDYCVEIPQQGFVRSLNVHVTAAIFMWEYARQNIL 343
                G+E+EG+P +L+  +D CVEIPQQG +RSLNVHV+ A+ +WEY RQ +L
Sbjct: 1562 LLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLL 1614


>AL136124-1|CAI22828.1| 1621|Homo sapiens Tar (HIV-1) RNA binding
            protein 1 protein.
          Length = 1621

 Score =  122 bits (293), Expect = 7e-28
 Identities = 55/113 (48%), Positives = 78/113 (69%)
 Frame = +2

Query: 5    RQFQGLSVSAERWIDIEELRPGGTLKEYLMRKKTEGYTLVAAEQTSTSCNXXXXXXXXXX 184
            +QFQ LSVSAE+W+ + E++P   L +YL +KKTEGYT++  EQT+ S +          
Sbjct: 1503 KQFQHLSVSAEQWLPLVEVKPP-QLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKS 1561

Query: 185  XXXXGHEKEGVPCDLLPIMDYCVEIPQQGFVRSLNVHVTAAIFMWEYARQNIL 343
                G+E+EG+P +L+  +D CVEIPQQG +RSLNVHV+ A+ +WEY RQ +L
Sbjct: 1562 LLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLL 1614


>BX538101-1|CAD98016.1|  672|Homo sapiens hypothetical protein
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 138 VCSAATRV*PSVFFLIRYSLSVPPGRSSSISIHL 37
           V SA T + P++  L +  LS PP  SSS+  H+
Sbjct: 269 VSSAPTHLTPNIILLNQTPLSTPPNVSSSLPNHM 302


>BX538016-1|CAD97963.1|  673|Homo sapiens hypothetical protein
           protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 138 VCSAATRV*PSVFFLIRYSLSVPPGRSSSISIHL 37
           V SA T + P++  L +  LS PP  SSS+  H+
Sbjct: 270 VSSAPTHLTPNIILLNQTPLSTPPNVSSSLPNHM 303


>BC042753-1|AAH42753.1|  673|Homo sapiens zinc finger and BTB domain
           containing 33 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 138 VCSAATRV*PSVFFLIRYSLSVPPGRSSSISIHL 37
           V SA T + P++  L +  LS PP  SSS+  H+
Sbjct: 270 VSSAPTHLTPNIILLNQTPLSTPPNVSSSLPNHM 303


>AL833604-1|CAD91170.1|  673|Homo sapiens hypothetical protein
           protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 138 VCSAATRV*PSVFFLIRYSLSVPPGRSSSISIHL 37
           V SA T + P++  L +  LS PP  SSS+  H+
Sbjct: 270 VSSAPTHLTPNIILLNQTPLSTPPNVSSSLPNHM 303


>AC002086-1|AAB54087.1|  672|Homo sapiens WUGSC:H_DJ525N14.1
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 138 VCSAATRV*PSVFFLIRYSLSVPPGRSSSISIHL 37
           V SA T + P++  L +  LS PP  SSS+  H+
Sbjct: 269 VSSAPTHLTPNIILLNQTPLSTPPNVSSSLPNHM 302


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,358,384
Number of Sequences: 237096
Number of extensions: 1336902
Number of successful extensions: 11738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11735
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)