Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P10
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical p...    85   2e-17
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    27   5.6  
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    27   7.4  
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    27   7.4  
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    27   7.4  

>U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical
            protein T14B4.1 protein.
          Length = 1146

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 47/108 (43%), Positives = 62/108 (57%)
 Frame = +2

Query: 11   FQGLSVSAERWIDIEELRPGGTLKEYLMRKKTEGYTLVAAEQTSTSCNXXXXXXXXXXXX 190
            F+ LS+S+E W  IE ++    L  YL   +  GYT++AAEQT+ S              
Sbjct: 1034 FKALSMSSENWQKIEGVKRTNLLP-YLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVI 1092

Query: 191  XXGHEKEGVPCDLLPIMDYCVEIPQQGFVRSLNVHVTAAIFMWEYARQ 334
              G EKEGVP +LL  +D  VEI Q G  RSLNVHVTAA+ + ++A Q
Sbjct: 1093 VMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMIAKFAEQ 1140


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 20   LSVSAERWIDIEELRPGGTLKEYLMRKKTEGYTLVAAEQTSTS 148
            L+VS ER  DI+ L P      +  ++K EG+ LV  +  S +
Sbjct: 2035 LAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNA 2077


>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
           protein 10, isoform b protein.
          Length = 1371

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 293 EHLTTSRSLVAVFPHNNPLSVINR 222
           + L+   S  AVFPHNN L+  NR
Sbjct: 785 QQLSLPHSQSAVFPHNNTLTSRNR 808


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
           protein 10, isoform a protein.
          Length = 1563

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 293 EHLTTSRSLVAVFPHNNPLSVINR 222
           + L+   S  AVFPHNN L+  NR
Sbjct: 785 QQLSLPHSQSAVFPHNNTLTSRNR 808


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
           molecule UNC-10 protein.
          Length = 1563

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 293 EHLTTSRSLVAVFPHNNPLSVINR 222
           + L+   S  AVFPHNN L+  NR
Sbjct: 785 QQLSLPHSQSAVFPHNNTLTSRNR 808


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,308
Number of Sequences: 27780
Number of extensions: 210082
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)