Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P10
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   1.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   2.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   4.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.6  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 372 NYVKTKNLNYSMFCLAYSHIKMAAV 298
           NY    N NY   C   +HI+   V
Sbjct: 90  NYSNYNNNNYKQLCYNINHIEQIPV 114


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 69  PGRSSSISIHLSADTLSP 16
           PG+S++ ++ +  DT++P
Sbjct: 140 PGKSTTTTVEVKRDTINP 157


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 115 IALGFFSHQVFLKRSSWSQ 59
           I LG   +Q FLK ++W++
Sbjct: 110 ILLGAKDYQTFLKTAAWAR 128


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 402 LFSECNLSKINYVKTKNLNYSMF 334
           +F+ C L K+  +   N+N  +F
Sbjct: 53  VFANCELQKLRLLLQGNINNQLF 75


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 69  PGRSSSISIHLSADTLSP 16
           PG+S++ +  +  DT++P
Sbjct: 140 PGKSTTTTAEVKRDTINP 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,619
Number of Sequences: 438
Number of extensions: 2941
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)