Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P09
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   1.8  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   2.4  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    24   5.5  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    24   5.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    23   9.6  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    23   9.6  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    23   9.6  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 131 TKCYVCTFHAILSEVFCIEGHNLLILTSYNT 223
           T+C+ C   ++ + V C  GH  L+ +   T
Sbjct: 136 TRCWSCALDSVKNIVPCDNGHTFLVCSEDGT 166


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -3

Query: 221 YYRMLILINYALRYRTLQKELHEMYIHNIL*KKKLHLDTGFRIIKKQTR*LKCKFYTYNT 42
           Y ++L      L++R   ++ + + I       ++  D  FRI+KK+ +  +     Y T
Sbjct: 564 YMKLLTFKKDLLKHRMFGRKKYFVRIDIKSCYDRIKQDLMFRIVKKKLKDPEFVIRKYAT 623

Query: 41  IHAPFNSALIN 9
           IHA  + A  N
Sbjct: 624 IHATSDRATKN 634


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 95  CEIQYRDAIFFFTKC 139
           C I+Y  AI FF+ C
Sbjct: 252 CTIEYEKAIVFFSSC 266


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 81  LFFNYAKSSIEMQFFFLQNVMYVHFMQFFLKCSVSKGI 194
           ++  Y   S E+  FF+    Y+ +  FF+ C+V + I
Sbjct: 431 IYKTYRSPSKEILAFFIDQTWYLFYALFFI-CNVPRVI 467


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 160 CMKCTYITFCKKKNCISILDFA*LKNKQDNLNVNFILITLS 38
           C    +++    KNCI  + F     K DN+ V    I L+
Sbjct: 334 CAGVAFLSRGAPKNCICRVSFKEFLEKNDNVGVQTSSIPLN 374


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 104 QYRDAIFFFTKCYVCTFHAILSEVFCIEGHNLLIL 208
           +Y  A+ +FTK Y      +++E    E H  +++
Sbjct: 81  RYAKAMLYFTKGYEQNLTEVINEAVFQEDHEEMVI 115


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 203 ILTSYNTYCDSP*DVSYYLWLLMFN 277
           ILTSY  Y  S  DV+ Y    MF+
Sbjct: 607 ILTSYENYKQSFSDVTIYCGTSMFH 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,899
Number of Sequences: 5004
Number of extensions: 21383
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)