Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P09
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    29   0.62 
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   1.9  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   2.5  
Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    26   5.8  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    26   5.8  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    26   5.8  
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    25   7.6  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm recept...    25   7.6  
AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine r...    25   7.6  
AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine re...    25   7.6  

>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 78  CLFFN--YAKSSIEMQFFFLQNVMYVHFMQFFLKCS 179
           C FF+  + K S ++ FFF  NV  +   QFF +CS
Sbjct: 278 CKFFSCDFRKKS-KISFFFFGNVSILKNFQFFFRCS 312


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 160 CMKCTYITFCKKKNCISI 107
           C+K TY+   +KKNC+ I
Sbjct: 555 CIKLTYLNLTRKKNCLLI 572


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 119 IFFFTKCYVCTFHAI----LSEVFCIEGHNLLILTSYNTYCDSP*DVSYYLWLLMFNFV 283
           IF FT   V +++ +    L  +             YNTY D+    +Y++++ MF+F+
Sbjct: 394 IFIFTCLVVLSYYGVFFNHLGNILLSVNRLSATCVWYNTYFDNSSIRAYFIFITMFSFI 452



 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +2

Query: 122 FFFTKCYVCTFHAILSEVFCIEGHNLLILTS-------YNTYCDSP*DVSYYLWLLMFNF 280
           F F  C V +++ +    F +  + LL L         YNTY D P    Y+L + + +F
Sbjct: 83  FAFVCCVVASYYGVF---FNLLSNGLLSLNRFCATWVWYNTYFDKPLIKLYFLIISLVSF 139

Query: 281 VA 286
           +A
Sbjct: 140 IA 141


>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 146 CTFHAILSEVFCIEGHNLLILTSYNTYCDSP 238
           CT  ++L +V  ++ HN+ ++ S   +C+SP
Sbjct: 72  CTDFSLLPDVAKLQMHNVEVVRSVLFHCNSP 102


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 193 MPFDTEHFRKNCMKCTYIT-FC 131
           M   T H++  CM CTY T +C
Sbjct: 592 MKSHTNHYQFRCMDCTYATKYC 613


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 193 MPFDTEHFRKNCMKCTYIT-FC 131
           M   T H++  CM CTY T +C
Sbjct: 614 MKSHTNHYQFRCMDCTYATKYC 635


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 193 MPFDTEHFRKNCMKCTYIT-FC 131
           M   T H++  CM CTY T +C
Sbjct: 614 MKSHTNHYQFRCMDCTYATKYC 635


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 101 IQYRDAIFFFTKCYVCTFHAILSEVFCIEGHNLLILTSYNTY 226
           I Y DAI    K  +     +      +E H+LL+ +SY+++
Sbjct: 319 IDYGDAISVGKKTPISPPDGVTLPFLSLEAHDLLVTSSYSSF 360


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 101 IQYRDAIFFFTKCYVCTFHAILSEVFCIEGHNLLILTSYNTY 226
           I Y DAI    K  +     +      +E H+LL+ +SY+++
Sbjct: 319 IDYGDAISVGKKTPISPPDGVTLPFLSLEAHDLLVTSSYSSF 360


>U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm receptor
           protein 146 protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 34  AWI-VL*V*NLHLSYLVCFLIMRNPVSRCNFFFYKMLCMYISCNSF 168
           AWI +L    +H+    C + M +P+       Y + C+Y  C SF
Sbjct: 52  AWIEILAQPIIHIKSPACVVFMESPLKYYPVLGYNITCLY--CGSF 95


>AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform a protein.
          Length = 233

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 42  SVISIKFTFKLSCLFFNYAKSSIEMQFFFLQNVMY--VHFMQFFLKCSVSKG 191
           +++   FT++   LF N A +   M +  +  V+Y  +H + + + C V  G
Sbjct: 104 AILHAHFTYRFMVLFKNKALAKYFMPYGLILTVLYCILHMIYWVITCYVYIG 155


>AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform b protein.
          Length = 341

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 42  SVISIKFTFKLSCLFFNYAKSSIEMQFFFLQNVMY--VHFMQFFLKCSVSKG 191
           +++   FT++   LF N A +   M +  +  V+Y  +H + + + C V  G
Sbjct: 104 AILHAHFTYRFMVLFKNKALAKYFMPYGLILTVLYCILHMIYWVITCYVYIG 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,423,365
Number of Sequences: 27780
Number of extensions: 123185
Number of successful extensions: 269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)