Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P07
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   0.69 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   3.7  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   4.9  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    24   8.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   8.5  

>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 90  TSTTESDPYSKEPY--RPLGPLVKCSFLPLEFLDCDEPIDHKGNRTAKDAIGH 242
           T+T   D   +E Y  R +G  +   F P+E+ D DE      NRT KD +G+
Sbjct: 478 TNTPNLDEKRREFYGKRVIGVRMCWDFPPVEYEDKDEIWSPVINRTDKDWLGY 530


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 129 YRPLGPLVKCSFLPLEFLDCDEP---IDHKGNRTAKDA 233
           + P GPL++C  +P+       P   ++++ +R A+DA
Sbjct: 27  FEPFGPLIRCD-IPIPRTRTSRPFAFVEYEDSRDAEDA 63


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 344 KTSAS*TFDAIQCFTLYFSFFYVVIIYTPEFN 249
           K  AS   DA QCF +  SF+ + I+Y  +F+
Sbjct: 258 KKVASANMDA-QCFYVQNSFYKITILYEIKFD 288


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 295 YNVKHWMASNV 327
           +  KHWMASN+
Sbjct: 107 FKTKHWMASNI 117


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 290 SFFYVVIIYTPEFNASMTDGIFSCAVSFVIYR 195
           +F+YV++   PEF + + DG+   +  F I R
Sbjct: 560 TFYYVLL---PEFKSVLYDGLVEISCDFKIRR 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,398,678
Number of Sequences: 5004
Number of extensions: 24754
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)