Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P07
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083...    35   0.023
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...    30   0.48 
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    30   0.64 
05_04_0239 + 19320996-19321284,19321461-19321482,19321809-193219...    29   1.5  
01_06_1557 - 38231826-38233391                                         27   4.5  
07_01_0986 - 8314733-8314783,8315895-8318381                           27   6.0  

>04_04_0464 -
           25405629-25405665,25406644-25406710,25408112-25408373,
           25408989-25409198,25409818-25410006,25410087-25410548,
           25410889-25410936,25411972-25412301
          Length = 534

 Score = 34.7 bits (76), Expect = 0.023
 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +3

Query: 117 SKEPYRPLGPLVKCSFLPL---EFLDCDEPIDHKGNRTAKDAIGHGCVKFGGVYYDDVEK 287
           S+  YRP    V   +  +   EF D   P+ H G  T KD I H   + GG        
Sbjct: 129 SEMDYRPSRMAVVAKYAEVFIREFFD-QNPLSHVGIVTMKDGISHRLTEIGG-------S 180

Query: 288 TKVQCKALDG-IECSGSRSFPRA 353
            + Q KAL G +ECSG  S   A
Sbjct: 181 PESQIKALMGKLECSGEPSLQNA 203


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 186 CDEPID-HKGNRTAKDAIGHGCVKFGGVYYDDVEKTKVQCKALDGIECS 329
           C E I+ HKG    K+A      +   ++ DD+EK K+  + +DG E S
Sbjct: 271 CGETIEKHKGKLVVKEAPRAVSEREDRLFMDDIEKLKIANEEVDGDEDS 319


>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
            32208604-32208814,32208927-32209108,32209196-32209297,
            32210002-32211187,32212103-32212499,32212551-32212582,
            32212885-32213157,32213307-32213394,32213486-32213723,
            32213824-32214034,32214119-32214300,32214378-32214479,
            32214801-32216224,32216751-32216822,32217688-32217719,
            32218186-32218263,32218425-32218512,32218608-32218845,
            32219060-32219162,32219386-32219558,32219644-32219745,
            32219825-32220606,32220659-32221012,32224055-32224140,
            32224250-32224400,32224534-32224771,32224876-32225119,
            32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 237  GHGCVKFG--GVY-YDDVEKTKVQCKALDGIE 323
            GHGC+ +G  G + Y D+  +  +CK LDG E
Sbjct: 987  GHGCLHYGACGPFGYCDITGSFQECKCLDGFE 1018


>05_04_0239 +
           19320996-19321284,19321461-19321482,19321809-19321935,
           19322198-19322288,19322645-19322734,19322832-19322833,
           19323095-19323247
          Length = 257

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 108 DPYSKEPYRPLGPLVKCSFLPLEFLDCDEPIDHKGNRTAKDAIGHGCVKFGGVYYDDVEK 287
           DPY+ +P RP    +K +  P+E  +  +P+     +     +G G   +GG    ++ K
Sbjct: 127 DPYTDDPARPFEEWIK-THSPVEAAEKTKPLIAALKKDGTSTVGVGGYCWGGKVAVELSK 185

Query: 288 TK 293
           T+
Sbjct: 186 TE 187


>01_06_1557 - 38231826-38233391
          Length = 521

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 180 LDCDEPIDHKGNRTAKDAIGHGCVKFGGVYYDDVEKTKVQCK-ALDGIECSGSRSFPRAG 356
           LD      H+ +R+      HG V+    Y DD  K +++ + A  G  CS  R   R G
Sbjct: 122 LDVSHRFPHRSSRSRATWDFHGFVRAYAAYLDDRLKHRMKGRVASQGKWCSDGR---RDG 178

Query: 357 FP 362
           FP
Sbjct: 179 FP 180


>07_01_0986 - 8314733-8314783,8315895-8318381
          Length = 845

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 51  LITVLSIIFTVLPTSTTESDPYSKEPYRPLGPLVK 155
           L+  LSI+ T  P   + S P S+ P  P G L++
Sbjct: 15  LLAPLSILRTPTPRHLSSSSPPSQPPSSPAGELLR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,617,469
Number of Sequences: 37544
Number of extensions: 149456
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)