Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P07
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical p...    62   2e-10
AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm rec...    29   0.77 
AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm rece...    29   0.77 
Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical pr...    28   2.4  
X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.        27   4.1  
AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender...    27   4.1  
Z71178-4|CAA94877.1|  390|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobuli...    27   5.4  
AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical ...    26   7.2  
Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF039711-9|ABS19467.1|  281|Caenorhabditis elegans Temporarily a...    26   9.5  
AF016668-8|AAZ91349.1|  296|Caenorhabditis elegans Serpentine re...    26   9.5  

>L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical
           protein C02F5.13 protein.
          Length = 210

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
 Frame = +3

Query: 135 PLGPLVKCSFLPLEFLDCDEPID-----HKGNRTAKDAIGHG--CVKFGGVYYDDVEKTK 293
           PLGP+V+C FL   F+ C++P+        G + A ++  +   C+K GG   +DVE T 
Sbjct: 56  PLGPVVECRFLENSFILCEDPVPLYGPGQTGQQPANESFRNEGKCLKMGGYRAEDVEFTN 115

Query: 294 VQCKALDGIECSGSRSFPRAGFPC 365
           V+C+ L  IEC G R+F ++  PC
Sbjct: 116 VKCRVLPCIECHGPRTFTKS-TPC 138


>AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 154 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 18  TFSLKMKLTQTLITVLSIIFT-VLPTSTTESDPYSKEPYRPLGPLVKCSFLPLEF 179
           TFSL   +TQ +  VLS++   +L T    S P     Y+ L  L+ CS L + +
Sbjct: 3   TFSLIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYL--LIYCSGLSIAY 55


>AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 267 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 18  TFSLKMKLTQTLITVLSIIFT-VLPTSTTESDPYSKEPYRPLGPLVKCSFLPLEF 179
           TFSL   +TQ +  VLS++   +L T    S P     Y+ L  L+ CS L + +
Sbjct: 3   TFSLIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYL--LIYCSGLSIAY 55


>Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical
           protein ZK829.6 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 147 LVKCSFLPLEFLDCDEPIDHKGNRTAKDAIGHGCVKFGGVYYDDVEKTKVQCKALD-GIE 323
           LV CSFL  +  DC  P      RTA+   G   V+ GG+   + ++ K     +D   E
Sbjct: 250 LVICSFLGADMFDCVYP-----TRTAR--FGTAMVRRGGLMQLNQKRYKEDFLPIDKKCE 302

Query: 324 CSGSRSFPRA 353
           C+  +++ RA
Sbjct: 303 CNTCKNYTRA 312


>X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.
          Length = 113

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 305 FTLYFSFFYVVIIYTPEFNASMTDGIFSCAVSFVIYRFVAVKEFQR*KAAF 153
           FT  F F Y +++ T  FN S   G  S   SFV+   + ++  Q  ++ F
Sbjct: 36  FTGIFQFIYCLLVGTFPFN-SFLSGFISTVTSFVLASCLRMQVNQENRSEF 85


>AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical
           protein Y26D4A.2 protein.
          Length = 537

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 216 GFLCDLSVRRSQGIPTVKSCISLMG 142
           GF+C +     QGIP +KS   L G
Sbjct: 499 GFMCGVDPEGKQGIPPMKSIADLYG 523


>AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender
           against apoptoticdeath) homolog protein 1 protein.
          Length = 113

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 305 FTLYFSFFYVVIIYTPEFNASMTDGIFSCAVSFVIYRFVAVKEFQR*KAAF 153
           FT  F F Y +++ T  FN S   G  S   SFV+   + ++  Q  ++ F
Sbjct: 36  FTGIFQFIYCLLVGTFPFN-SFLSGFISTVTSFVLASCLRMQVNQENRSEF 85


>Z71178-4|CAA94877.1|  390|Caenorhabditis elegans Hypothetical
           protein B0024.4 protein.
          Length = 390

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 256 SGVYIMTT*KKLKYNVKHWMASNVQEAEVFQEP 354
           +G   +TT K+L  N  H++  NVQEAE+ + P
Sbjct: 108 TGFLYITTSKQLTNN--HFLVYNVQEAELIKVP 138


>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 272 IIYTPEFNASMTDGIFSC 219
           I+Y P F A   DGI++C
Sbjct: 203 ILYIPHFTAKKDDGIYNC 220


>U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical
           protein F02G3.1b protein.
          Length = 913

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 272 IIYTPEFNASMTDGIFSC 219
           I+Y P F A   DGI++C
Sbjct: 176 ILYIPHFTAKKDDGIYNC 193


>U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical
           protein F02G3.1a protein.
          Length = 928

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 272 IIYTPEFNASMTDGIFSC 219
           I+Y P F A   DGI++C
Sbjct: 176 ILYIPHFTAKKDDGIYNC 193


>AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobulin
           domain-containingprotein F02G3.1 protein.
          Length = 928

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 272 IIYTPEFNASMTDGIFSC 219
           I+Y P F A   DGI++C
Sbjct: 176 ILYIPHFTAKKDDGIYNC 193


>AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.11 protein.
          Length = 487

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 264 VYYDDVEKTKVQCKALD 314
           V+YDDVEK    C ALD
Sbjct: 106 VFYDDVEKFLTGCVALD 122


>Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical
           protein F44D12.9 protein.
          Length = 449

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 308 CFTLYFSFFYVVIIYTPEFNASMTDGIFS 222
           C+   F+ FYV  +    F A MTD ++S
Sbjct: 268 CWVQLFNNFYVYFVSLLIFPAMMTDSVYS 296


>AF039711-9|ABS19467.1|  281|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 296 protein.
          Length = 281

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 314 IQCFTLYF-SFFYVVIIYTPEFNASMTD 234
           +  F+LYF  FF+V I   P+F   MT+
Sbjct: 31  LSLFSLYFCDFFFVKIDKIPKFQLKMTE 58


>AF016668-8|AAZ91349.1|  296|Caenorhabditis elegans Serpentine
           receptor, class t protein41 protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 308 CFTLYFSFFYVVIIYTPEFNASMTD 234
           C+ LYF+FF   +++T ++ A   D
Sbjct: 121 CYGLYFAFFTPPLLFTSKYQAWFFD 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,718,939
Number of Sequences: 27780
Number of extensions: 139156
Number of successful extensions: 451
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)