Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P04
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   407   e-116
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   389   e-110
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   359   e-102
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   326   8e-92
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   1e-04
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   0.57 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.3  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   9.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  407 bits (1002), Expect = e-116
 Identities = 191/197 (96%), Positives = 193/197 (97%)
 Frame = +3

Query: 9   DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPG 188
           DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVTIIDAPG
Sbjct: 35  DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPG 94

Query: 189 HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 368
           HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK
Sbjct: 95  HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154

Query: 369 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 548
           MDSTEPPYSE+RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW
Sbjct: 155 MDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGW 214

Query: 549 LVERKEGKAEGKCLIEA 599
            VERKEGK EGKCLIEA
Sbjct: 215 TVERKEGKVEGKCLIEA 231


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  389 bits (957), Expect = e-110
 Identities = 182/197 (92%), Positives = 188/197 (95%)
 Frame = +3

Query: 9   DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPG 188
           DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVTIIDAPG
Sbjct: 35  DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPG 94

Query: 189 HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 368
           HRDFIKNMITGTSQADCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK
Sbjct: 95  HRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154

Query: 369 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 548
           MD T+PPYSE+RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW
Sbjct: 155 MDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGW 214

Query: 549 LVERKEGKAEGKCLIEA 599
            VERK+G A+GK LIEA
Sbjct: 215 KVERKDGNADGKTLIEA 231


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  359 bits (884), Expect = e-102
 Identities = 168/174 (96%), Positives = 170/174 (97%)
 Frame = +3

Query: 78  WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 257
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 258 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 437
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 438 IKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEA 599
           IKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIEA
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEA 174


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  326 bits (802), Expect = 8e-92
 Identities = 152/158 (96%), Positives = 154/158 (97%)
 Frame = +3

Query: 126 DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 305
           DIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 306 REHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPI 485
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 486 SGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEA 599
           SGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIEA
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEA 158


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +3

Query: 165 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 344
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 345 QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 515
            +IV +NK+D       + ++E  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 466 PSLSYPFLAGTEITC-WSRPPKCHGSRDGWLSVKKE 570
           P+L   F  G  + C  SRP +C G  DG++   KE
Sbjct: 160 PALEEQFATGRVLACISSRPGQC-GREDGYILEGKE 194


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 470 DGSRIVTNFLDVGRDFL 420
           DG R+V  F+DV +D +
Sbjct: 531 DGQRLVYQFVDVPKDII 547


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 150 TGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 251
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 150 TGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 251
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 390 YSESRFEEIKKEVSSYIKKIGYNPAAVAFVPI 485
           Y+ S +       ++Y KK+ YN   +  +P+
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYYNINYIEQIPV 120


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 9   DKRTIEKFEKEAQEMG 56
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 9   DKRTIEKFEKEAQEMG 56
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 9   DKRTIEKFEKEAQEMG 56
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 390 YSESRFEEIKKEVS 431
           Y E R+EEI+++ S
Sbjct: 17  YGEDRWEEIRRQAS 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,063
Number of Sequences: 438
Number of extensions: 3963
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)