Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P03
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    27   2.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.8  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   4.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   6.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.6  

>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +3

Query: 495 KMRTVHNILDVDNDGLISFNDFVL 566
           K+  + ++ D+D+DG+  F++F +
Sbjct: 41  KLEKIWDLADIDDDGMFDFDEFAI 64


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 319 RRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTP 450
           RR++  + P  P  PS     N     KPI GN+   Q+P+ +P
Sbjct: 178 RRSSAGTDPFSPVSPSNP---NFLTPLKPIDGNQEWQQSPLESP 218


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 346  NEPPRPSGDATANTTAAPKPIAGNENLIQ 432
            N PP P+  A  NTT A  P+      I+
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIK 1052


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 334 ASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 462
           A++P  P  P   A A TT    P+A     +  P   P P A
Sbjct: 363 AAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAA 405


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 380 QTPRPPRNRSQETRI*FRIRFGLRHRMQGI*SFRI 484
           QT R  RN+ +E  I  +IRF L    Q I +F +
Sbjct: 232 QTSRYARNKQKEINILQQIRFNLERICQDIGNFDV 266


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 328 NLASWPNEPPRP-SGDATANTTAAPKPIAGNENLIQN--PIRTPTPNARDLIVQN 483
           N A+ P  PP+    + T NT A+P  +    + +QN  P+   +  A  ++ QN
Sbjct: 247 NQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTSSPAMAVVPQN 301


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 586 GFDVSAKRTKSLNEISPSLSTSRMLWTVRIL 494
           G +  +    +LNE+S   ++ R+ W++R+L
Sbjct: 466 GLEHGSTDNSTLNEVSTEETSIRICWSLRVL 496


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 319 RRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 462
           R A  ++ P   P PSG   A  +  P PI+        P+ TPT  A
Sbjct: 634 RPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAYQ-HGTPLATPTMRA 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,982
Number of Sequences: 5004
Number of extensions: 45386
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)