Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P03
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1382 - 26170563-26170631,26171151-26171843 30 1.3
03_05_0173 + 21502765-21504216 30 1.3
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 30 1.3
03_06_0094 + 31610866-31611288 29 2.2
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 2.9
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172 29 2.9
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 29 3.8
08_02_1589 + 28070286-28070525,28072224-28072565 28 5.1
07_01_0437 - 3322132-3322251,3322345-3322569,3322953-3323120,332... 28 5.1
04_04_0199 - 23519597-23520282,23520913-23521471 28 5.1
04_03_1000 + 21604164-21605387,21605467-21605817 28 5.1
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 28 5.1
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198... 28 5.1
04_04_0897 - 29186821-29187459 28 6.7
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 6.7
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 28 6.7
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 27 8.9
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 27 8.9
04_03_1035 - 21887562-21890030 27 8.9
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648 27 8.9
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 27 8.9
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 325 ANLASWPNEPPRPSGDATANTTAAPKPI 408
A L P PP+PSGDA N P P+
Sbjct: 180 AQLGPPPPPPPQPSGDANENPPPPPPPL 207
>03_05_0173 + 21502765-21504216
Length = 483
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 343 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQN 483
P PP P G A + P N+ L+ N PTP + L+ N
Sbjct: 272 PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASN 318
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 319 RRANLASWPNEPPRPSGDATANTTAAPK 402
R LA P EP P+ A A T AAPK
Sbjct: 177 REERLAQGPREPAAPAAAAPAQTAAAPK 204
>03_06_0094 + 31610866-31611288
Length = 140
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 304 SVRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLI 429
S GGRR A P P P D TA AAPKP + +
Sbjct: 78 SPAGGRRRRGAVAPLVFPLPEEDDTAVAAAAPKPAVARKRRV 119
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 349 EPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVR 498
+P G + TAAP+ A N L+ N TP+ +A + N +VR
Sbjct: 585 QPISHYGSIPSGATAAPEAAATNSELVCNSGATPSASATGAAMTNLQLVR 634
>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
Length = 618
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -1
Query: 604 LVEMPEGFDVSAKRTKSLNEISPSLSTSRMLWTVRILRRQNSERSNPL 461
+ E+PEG SAK + N ++ L T++ + + + +++ R +P+
Sbjct: 414 MTEIPEGEQCSAKESVLKNLVADDLPTNQEIAAIVVRKQRRERRKSPV 461
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 492 RKMRTVHNILDVDNDGLISFNDFVLFAETSNPSGISTRSR 611
R+++ + + +D DNDG I++ +FV +P + R
Sbjct: 504 REIKDIISEVDADNDGRINYTEFVAMMRKGDPEANPKKRR 543
>08_02_1589 + 28070286-28070525,28072224-28072565
Length = 193
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 519 LDVDNDGLISFNDFVLFAETSNP 587
+D D DG I FN+F+ F +NP
Sbjct: 51 IDTDGDGFIDFNEFISFC-NANP 72
>07_01_0437 -
3322132-3322251,3322345-3322569,3322953-3323120,
3323207-3323322,3323394-3323546,3323655-3323798,
3324475-3325255
Length = 568
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 519 LDVDNDGLISFNDFV-LFAETSNPSG 593
+D DNDG I +N+FV + + +NP G
Sbjct: 525 IDQDNDGRIDYNEFVTMMQKGNNPLG 550
>04_04_0199 - 23519597-23520282,23520913-23521471
Length = 414
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 578 RLSEKDEIIERDQPVIVYIQDVVDGSHLTTP 486
+L E I V+ +Q+++DG H+ TP
Sbjct: 234 KLEEASNTIREKNSVLSQLQELIDGMHIATP 264
>04_03_1000 + 21604164-21605387,21605467-21605817
Length = 524
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 307 VRGGRRANLASWPNEPPRPSGDATANT-TAAPKPIAGNENLIQNPIRTPTPNARDLI 474
VR GRR + + E P GDA T P + G E + + R +A D +
Sbjct: 36 VREGRRVVIVEYEREHPLYPGDAVKETHVLPPDSLDGGEGRLTDKARGAVSDAADRV 92
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 370 DATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEP 507
+A + AP I GN +QN + P+ + +VQN V+ +P
Sbjct: 159 NADVSHIGAPNSIGGNATPVQNMLSGPSGGSGSQLVQNVDVLVKQP 204
>01_06_1074 +
34318685-34319314,34319429-34319546,34319662-34319814,
34319906-34320021,34320135-34320302,34320424-34320551,
34320645-34320744,34320866-34320958
Length = 501
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 492 RKMRTVHNILDVDNDGLISFNDFVLFAETSNPSGISTRSR 611
R ++ + + +D DNDG I +++F NP + R
Sbjct: 458 RDIKDIISEVDADNDGRIDYSEFAAMMRKGNPEANPKKRR 497
>04_04_0897 - 29186821-29187459
Length = 212
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 543 SARHCLHPGCCGRFASYDARILNDQIPCIRCRSP 442
+ RH H GC R+ +D DQ C CR+P
Sbjct: 130 NCRHVFHRGCLDRWMEHD-----DQRTCPLCRAP 158
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 308 SAAGDARISRAGRTSRQGPQAMLQQTPRPPR 400
+ AG + SR R R+GP A T PPR
Sbjct: 41 NGAGQTQASRTARKRRKGPVADPSSTELPPR 71
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 519 LDVDNDGLISFNDFVLFAETSNPSGISTRSR 611
+D D+DG I++ +FV +NP R R
Sbjct: 486 VDTDHDGRINYQEFVAMMRNNNPEIAPNRRR 516
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +1
Query: 352 PPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEP 507
PP P G +T + TA P P AG P R R + + + R P
Sbjct: 23 PPTPRGMSTPDGTATPPPAAGRG--AATPARRVVEGLRGYLEEVGHLTRLNP 72
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 492 RKMRTVHNILDVDNDGLISF 551
RK+R++HN LD + GL+ +
Sbjct: 11 RKLRSLHNALDCERSGLVRY 30
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 245 SSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSR 355
+S+ NP K + CGL+P AA RIS A ++R
Sbjct: 38 NSSSNPSKQHLA-CGLVPAAGGAAAGYRISCASVSNR 73
>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
Length = 587
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 265 VW-INVT*FGALVTQKTAVHLSKLKTDRNPNLIIETAILSFTIF 137
VW + + A+V Q T V LS L++DR+ + SFT+F
Sbjct: 351 VWSTGIIYYVAVVQQSTYVVLSALQSDRHLGRSFQIPAASFTVF 394
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 313 GGRRANLA-SWPNE-PPRPSGDATANTTAAPKP 405
GGRRA A S+ N PPRPS ++ + +P+P
Sbjct: 136 GGRRACEAFSFKNRAPPRPSSSQASSPSLSPQP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,191
Number of Sequences: 37544
Number of extensions: 330238
Number of successful extensions: 1366
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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