Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P03
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81487-1|CAB03995.2|  288|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF025464-4|AAB71017.3|  310|Caenorhabditis elegans Mnat (menage ...    29   3.5  
Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein ...    28   4.6  
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    27   8.0  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    27   8.0  

>Z81487-1|CAB03995.2|  288|Caenorhabditis elegans Hypothetical
           protein C54E10.2 protein.
          Length = 288

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 519 LDVDNDGLISFNDFVLFAETSNPSGI 596
           LD D DGL++++D + F + +N S I
Sbjct: 244 LDCDRDGLVTYDDMIRFFQKNNDSSI 269


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 343 PNEPPRPSGDATANTTAAPKPIA 411
           P  PP P+  ATA    APKP+A
Sbjct: 847 PAPPPPPATQATAAPVTAPKPVA 869


>Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical
           protein T19B10.6 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 504 FASYDARILNDQIPCIRCRSPNRILNQILVSCDRFRGGRGVCCSIA*G-PWRLVRPAREI 328
           F  +DAR     + C   +   R+     +     RGGRG  CSI    P   +RP  ++
Sbjct: 24  FIQFDARFFGGSLACCEVKWSPRMYACAGICSYEIRGGRGGLCSIRLSKPLLTLRPRSDL 83


>AF025464-4|AAB71017.3|  310|Caenorhabditis elegans Mnat (menage a
           trois) tfiih subunitprotein 1 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 471 DRSEFWRRKMRTVHNILDVDNDGLISFNDF 560
           D+  F RRK+R ++N+   D + L  F D+
Sbjct: 67  DKETFLRRKLRKIYNLKQDDFENLREFGDY 96


>Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical
           protein F01G10.8 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 603 SSRCPRDLTSQRKGRNH*TRSARHCLHPGCCGRFASYDA--RILNDQIPCIRCRSPNRIL 430
           S  C   LTSQ   RN  +   R+ +  G    + + +    +L DQI  ++C   N+ L
Sbjct: 122 SDECRMSLTSQPSSRNSKSSQIRNTVGAGIQLAYENGELWLTVLTDQIVFVQCPFLNQTL 181

Query: 429 NQIL 418
           N+ L
Sbjct: 182 NKPL 185


>AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein
           protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 603 SSRCPRDLTSQRKGRNH*TRSARHCLHPGCCGRFASYDA--RILNDQIPCIRCRSPNRIL 430
           S  C   LTSQ   RN  +   R+ +  G    + + +    +L DQI  ++C   N+ L
Sbjct: 122 SDECRMSLTSQPSSRNSKSSQIRNTVGAGIQLAYENGELWLTVLTDQIVFVQCPFLNQTL 181

Query: 429 NQIL 418
           N+ L
Sbjct: 182 NKPL 185


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 468 FDRSEFWRRKMRTVHNILDVDNDGLISFND 557
           FD +    +K+R +++ LD DNDG I   D
Sbjct: 65  FDLTPEKEKKIRDMYDRLDADNDGSIDIRD 94


>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 215 SRFLCYQCSKSSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRP 394
           SR++CY  SKS NV+     ++    LP    A      SR+  T       ++  T  P
Sbjct: 248 SRYICYDASKSDNVSMDSVFVESPHSLPTNV-APRIPPSSRSSFTQHSNDSGVVLST--P 304

Query: 395 PRNRSQET 418
           P + S +T
Sbjct: 305 PTSSSAKT 312


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 609 CFSSRCPRDLTSQR---KGRNH*TRSARHCLHPGCC 511
           C  + CPR LT+ +   K + H  R+  HC   GCC
Sbjct: 377 CKLAVCPRSLTAVKFTCKTQYH-CRANEHCFFGGCC 411


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 337 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 456
           S+P+  P  SG ++ +T AAP P    E+    P R P P
Sbjct: 538 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 577


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 337 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 456
           S+P+  P  SG ++ +T AAP P    E+    P R P P
Sbjct: 364 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,490,466
Number of Sequences: 27780
Number of extensions: 272871
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)