Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P02
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    28   1.2  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   4.7  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   6.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.3  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   8.3  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 HILR-CLKKETKS*IENNSLSIPFEHISITIFYTEYIYIHSF 508
           HI++ C   +  S  E   L + +EH+++ +  T YIY+ SF
Sbjct: 451 HIVKLCKAMDELSTSEKRILWLCYEHVAMHVETTLYIYVQSF 492


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 407 KETKS*IENNSLSIPFEHISITIFYTEYIYIHSFVLVRIVYYI*N 541
           K+    I N S  +PFE  S T+    +IY+ S+ L + + ++ N
Sbjct: 168 KDNHDKILNWSRLVPFEIQSSTLNSASFIYLDSYELGKFISHLYN 212


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 368 GRRVKDHILRCLKKETKS*IENNSLSIPFEHI 463
           G   ++++L   KK   S +++  L +PFEH+
Sbjct: 785 GVSAEEYVLNTFKKIRSSHLDDALLVLPFEHV 816


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -1

Query: 585 TSYKVYIYTYAYKTLFYI*YTIRTSTKECIYIYSV*KIVIDICSKGMDSELF 430
           T+++  ++ Y  +   YI   ++  TK   ++Y   +  + IC++ +D E+F
Sbjct: 99  TAHRPEVF-YLLECCTYILEQMQVVTKNTSHLYDCIRSGVSICNRLLDMEIF 149


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 533 YNTQYAPVQKNVYIYIQCKKL 471
           YNTQ  P+   +  Y +CK+L
Sbjct: 102 YNTQVMPLWSGMGFYTRCKRL 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,409
Number of Sequences: 5004
Number of extensions: 50942
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)