Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P02
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0282 + 2093451-2094668                                           28   6.4  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     28   6.4  

>11_01_0282 + 2093451-2094668
          Length = 405

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 290 KHWNGRLNSSDAALQASLIYYSEY 219
           + W+G LN  D AL+  L+ Y E+
Sbjct: 62  RDWDGLLNPLDGALRGELVRYGEF 85


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 145  LILRINLCLVQDYLNLNGQDCQLWVKEISRLSHYVK 38
            L+ ++ L L+ D   L+   C+LW+  +SR+  Y+K
Sbjct: 1335 LVAKVYLQLLPDLFGLSSF-CKLWLGVLSRMEKYIK 1369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,563
Number of Sequences: 37544
Number of extensions: 256813
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)