Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P02
         (591 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AB076400-1|BAB86868.1| 1097|Homo sapiens fat3 protein.                 31   4.0  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    30   5.3  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 460 YIYNNFLH*IYIYTFF-CTGAYCVLYIK*CL----ICVCVYVN 573
           YIY      IY+YT + CT  Y   YI  C+    I VCVY++
Sbjct: 122 YIYTCIQIYIYMYTLYVCTYTYMCTYIHICIHTSIIYVCVYIH 164


>AB076400-1|BAB86868.1| 1097|Homo sapiens fat3 protein.
          Length = 1097

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -3

Query: 307 LNLIIISIGMDD*IVRMRRYKLHLYITQNILTYYFDYL*ARKRLRHLHFTKITLLILRIN 128
           LN    S+ +DD  V  RR  L+        + YF  L     +R L  T++T ++    
Sbjct: 432 LNRNFTSLSLDDSYVERRRAPLYFQTLSTESSIYFGALVQADNIRSLTDTRVTQVLSGFQ 491

Query: 127 LCLVQDYLNLN 95
            CL    LN N
Sbjct: 492 GCLDSVILNNN 502


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 458 HISITIFYTEYIYIHSFVLVRIVYYI*NNVLYAYVYM*TLYDVY 589
           +I + IF   YIY+H F+ + I  YI    LY ++Y+    ++Y
Sbjct: 62  YIYLYIFTYIYIYLHIFIYLHIFIYI-CICLYIFIYVFIYINIY 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,885,693
Number of Sequences: 237096
Number of extensions: 1507635
Number of successful extensions: 2503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2480
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)