Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P02
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p...    29   3.3  
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z48544-4|CAA88443.3|  250|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical
           protein F39D8.3 protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 229 TQNILTYYFDYL*ARKRLRHLHFTKITLLILRINLCLVQDYLNLNGQ-DCQLWVKEISRL 53
           T     Y++DY   + R +H++F  + L  +    C V    NLN +  C+ +V E+S  
Sbjct: 301 TDKACLYFYDYPHGKCRQKHMNF--VVLRNVGTKECQVWKKFNLNVRVSCECFVDEMSFF 358

Query: 52  SHYV 41
           + YV
Sbjct: 359 AKYV 362


>Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical
           protein T01E8.7 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 438 HCPSLLNIYL*QFFTLNIYIYILLYWCVLCIIYKIMSYMRMCICKLYMMCT 590
           H P  L I L     + I IYI   +C+LC     M+ +++ I  L+   T
Sbjct: 12  HSPKFLQISLHIISAVGIPIYIFGGYCILCKTPNQMNLVKLVIFNLHFWST 62


>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
           protein F46F11.1b protein.
          Length = 1225

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/58 (24%), Positives = 36/58 (62%), Gaps = 8/58 (13%)
 Frame = +2

Query: 371 RRVKDHILRCLK----KETKS*IE---NNSLSIPFEHISITIFYTEYIYIHSFV-LVR 520
           R++++ + RCL+    +ET++ ++   +  ++ PF H+   +++T   +IH+ + L+R
Sbjct: 798 RKIRNDLHRCLENKESEETQTRLDPRASQGIATPFRHVRTRLYFTSESHIHTLMNLIR 855


>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
           protein F46F11.1a protein.
          Length = 1339

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/58 (24%), Positives = 36/58 (62%), Gaps = 8/58 (13%)
 Frame = +2

Query: 371 RRVKDHILRCLK----KETKS*IE---NNSLSIPFEHISITIFYTEYIYIHSFV-LVR 520
           R++++ + RCL+    +ET++ ++   +  ++ PF H+   +++T   +IH+ + L+R
Sbjct: 798 RKIRNDLHRCLENKESEETQTRLDPRASQGIATPFRHVRTRLYFTSESHIHTLMNLIR 855


>Z48544-4|CAA88443.3|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.5 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 91  QDCQLWVKEISRLSHYVKK-LATP 23
           ++C  W+  IS L+H+ KK ++TP
Sbjct: 127 EECWTWIHSISTLAHHEKKMISTP 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,351
Number of Sequences: 27780
Number of extensions: 268082
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)