Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_P02
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.0  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 523 NTHQYKRMYIYIFSVKN 473
           NT++YK  YI++  VK+
Sbjct: 141 NTNKYKDYYIWVDPVKD 157


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 187 GLISNRSNKLRYSE*YISEACNAASELFNRPFQ 285
           GL+ NRS  L +    ++E  N    + +R F+
Sbjct: 426 GLLRNRSEYLNHLRANVAEGRNQRKNVLDRLFR 458


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/32 (21%), Positives = 14/32 (43%)
 Frame = +3

Query: 483 LNIYIYILLYWCVLCIIYKIMSYMRMCICKLY 578
           +N+Y  ++L W +      + S +    C  Y
Sbjct: 73  MNVYYIVILAWAIFYFFMSMRSELPWGSCNNY 104


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 453 LNIYL*QFFTLNIYIYILLYWCVL 524
           ++IY    F +   ++I+LYW +L
Sbjct: 362 IDIYSRIGFPILFMLFIILYWPIL 385


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 133 INLCLVQDYLNLNGQDCQL 77
           I LCL Q+ LNL+  D  L
Sbjct: 24  ITLCLKQENLNLDDIDSLL 42


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 447 MDSELFSIYDFVSFFKHLSI*SFTRLP*EIHKLPELRIYLSDPS 316
           + S  F ++    + +H+     T  P  IH+L      L+DPS
Sbjct: 308 LSSLAFRVFQSTQYIRHIKSPYHTPEPDCIHELLGHMPLLADPS 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,794
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)