Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_P01
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 263 1e-71
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 118 6e-28
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 114 9e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 68 1e-12
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 1.0
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 2.4
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 5.6
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 7.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 263 bits (645), Expect = 1e-71
Identities = 116/149 (77%), Positives = 137/149 (91%)
Frame = +1
Query: 16 GSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNK 195
GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q K
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 196 NSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLH 375
NS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLH
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLH 396
Query: 376 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 462
WYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 118 bits (285), Expect = 6e-28
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 8/148 (5%)
Frame = +1
Query: 40 TVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEW 219
+V E+T Q F+ N M CDPR GRY+ ++RG + ++V + I+ K + FV+W
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346
Query: 220 IPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLH 375
P K +CD PP+ ++ A + N+T+I E + R+ +F M+ ++AF+H
Sbjct: 347 CPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 406
Query: 376 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 459
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 114 bits (275), Expect = 9e-27
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 8/148 (5%)
Frame = +1
Query: 40 TVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEW 219
+V E+T Q F+ N M CDPR GRY+ ++RG + ++V + +I+++ + FV+W
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDW 350
Query: 220 IPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLH 375
P K +C PP+ + A + N+T+I E + R+ +F M+ ++AF+H
Sbjct: 351 CPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 410
Query: 376 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 459
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 411 WYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 67.7 bits (158), Expect = 1e-12
Identities = 38/149 (25%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Frame = +1
Query: 31 RALTVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 207
R TV ++ +++ KN M + +P + ++++ I +G +V + +L I+ + +
Sbjct: 288 RKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYAS 347
Query: 208 FVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 378
F+ W P +++ A+ P +++ + N T+I LFKR +Q+ + +R AFL
Sbjct: 348 FIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQ 407
Query: 379 YTGEGMDEMEFTEAESNMN---DLVSEYQ 456
Y E + E + E +S+ + DL++EY+
Sbjct: 408 YKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 295 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 402
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 133 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 306
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 307 IQELFK 324
+EL++
Sbjct: 403 KEELYE 408
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 112 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 237
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 112 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 228
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,027
Number of Sequences: 5004
Number of extensions: 34823
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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