Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O24
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 119 2e-27
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 110 7e-25
04_03_0201 - 12586324-12587131,12590080-12591512 29 2.2
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 28 5.0
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 28 6.6
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 28 6.6
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 27 8.7
01_03_0196 - 13696056-13697448,13697676-13697713 27 8.7
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 119 bits (286), Expect = 2e-27
Identities = 73/190 (38%), Positives = 103/190 (54%), Gaps = 5/190 (2%)
Frame = +2
Query: 29 DELFDVRNAFYVGNYQQAINEAQRINPS---SPLVALQRDVFLYRSYIAQGNHRIVLQEL 199
D LF +RN+FYVG YQ I Q I SP +RD LYRSYIA G+H++V+ E+
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 200 KT-ADPILQPLKSLVDYLSPGAN-KPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDN 373
A LQ ++ L YLS GA K + + ++ +A SN + +VA T+ +E +
Sbjct: 68 GPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127
Query: 374 YEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQAWINLS 553
Y ALK + +EL A ++Q L M+R D A +D TLTQLA AW++L
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLV 187
Query: 554 QGGPGVPDAH 583
GG + +AH
Sbjct: 188 MGGSKIQEAH 197
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 110 bits (265), Expect = 7e-25
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQEL-KT 205
D LF++RN FY+G YQ AIN + + A +RD ++RSY+A G++++V+ E+ +
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSS 63
Query: 206 ADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAA 385
A LQ +K L YLS +K + + + ++ SN V ++A I+ +E +Y A
Sbjct: 64 AATSLQAVKLLALYLS--GDKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEA 121
Query: 386 LKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQAWINLSQGGP 565
LK H ++L A ++Q + M+R D A +D TLTQLA AW++++ GG
Sbjct: 122 LKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGS 181
Query: 566 GVPDAH 583
+ +A+
Sbjct: 182 KIREAY 187
>04_03_0201 - 12586324-12587131,12590080-12591512
Length = 746
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 581 AHPAPRARPATN*SKLELVVLKFRHPQVPVAVSV 480
AHP P+ARPA + L KFR P +P + V
Sbjct: 654 AHPDPKARPAIRQAAEALQSRKFRMPVLPPRMPV 687
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 509 HPQVPVAVSVLSAPNPDGSWPTGTV 435
H VP+ V +LS+P D W G V
Sbjct: 160 HGAVPIFVKLLSSPREDAVWALGNV 184
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 518 KFRHPQVPVAVSVLSAPNPDGSWPTGTV*SMLSAPLIQYRGKFSKLL 378
+FRH +P + S L +P P G+ S L AP RG LL
Sbjct: 125 RFRHAVLPESASPLHSPAPAAGLAIGSFASDLGAPWFCPRGHPVSLL 171
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 230 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALKI 394
KSL++ G+ P + ID R+ E HVV A YY EA I
Sbjct: 321 KSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSI 375
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 101 INPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANK 268
I PSS + ++ D+F + N+ + +Q+L + I P + LS G N+
Sbjct: 188 IKPSSTWLNVEHDIFYREHGLNMTNYILSIQKLGSVKYISSPELGFLQSLSGGINR 243
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/52 (17%), Positives = 23/52 (44%)
Frame = +2
Query: 359 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDG 514
Y+ + ++++K HD + + + A + C+++ P L + G
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDKTAASTTSTG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,894
Number of Sequences: 37544
Number of extensions: 308627
Number of successful extensions: 692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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