Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O24
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    96   1e-20
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    31   0.48 
Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)
 Frame = +2

Query: 29  DELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQEL--K 202
           D+LF +RN F++G+YQ  I EA + +  +     ++DV+LYRSYIAQG   I L+E+   
Sbjct: 3   DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62

Query: 203 TADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEA 382
           T    L  ++   ++ +  A K  I+A++   VA    + +E+  V+AATI    D  + 
Sbjct: 63  TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVA-SRNIKSEIAAVLAATILNEADLSQD 121

Query: 383 ALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQAWINLSQGG 562
           A +     E +E RA  +  L+ MN+  LA           +D TL+QLA A +      
Sbjct: 122 AFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGAS 181

Query: 563 PGVPDAHYSIME 598
             V DA Y   E
Sbjct: 182 GKVKDALYIYSE 193


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
            family protein 2 protein.
          Length = 1551

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 335  HVVAATIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDL 469
            H V + ++     Y   + IF  + + ++RA     L  MNRPD+
Sbjct: 1075 HTVCSIVFLVLPQYNLGIAIFRGLMIYQVRAIGSNFLQQMNRPDM 1119


>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 185 VLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEV 331
           +L+ LKT   IL+PL  L++ ++P      +  DI  ++    + +NEV
Sbjct: 36  ILEVLKTIKEILEPLPCLIEIIAP----VVVFGDIHGQLGDLLQFTNEV 80


>Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical
           protein M88.1 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 379 FIIIFIVINSGSNYMKYLIR*LCTFC 302
           FI+IFIV   G  +M+ +IR  C FC
Sbjct: 498 FIVIFIVFYIGYRFMRAVIR--CCFC 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,168,958
Number of Sequences: 27780
Number of extensions: 270093
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)