Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O23
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    30   0.22 
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    30   0.22 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.68 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   6.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   8.3  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   8.3  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 247 GTQVDDNDYLATLAPQTLFILLK---KSENMVTDFDFYYNMIRSPKKEYIDTGAAATEF 414
           G QVDD+D L T+A  +L++LL    KS    T F       RSP      TG   + +
Sbjct: 671 GPQVDDSDALITIALDSLYVLLNMRAKSTPNSTSFSSPPTPHRSPFSGQAFTGMGLSNY 729


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +1

Query: 304 ILLKKSENMVTDFDFYYNMIRSPKKEYIDTGAAATEFLST---NIKEKFKVFQKYIAAAD 474
           ILLK  +N     D +     S +K  +    A TE+LS     + ++  ++ K+I +++
Sbjct: 25  ILLKMEDNTYEYVDVFLEKYESQQKLLLKLTKAITEYLSNLKPQLSKQENIYVKHIKSSN 84

Query: 475 DARTIL 492
           +A+T L
Sbjct: 85  EAKTEL 90


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
 Frame = -2

Query: 581 SVTRLDIVCSFVFSDGSSPSNQPGS*LRSLRIVRASSAAAMYFWNTLNFSLMLVERNSVA 402
           S T   +  S   S   + S+   S L S  I  +S A++    +T + SL     NS  
Sbjct: 113 SATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASS----STTSSSLASSSTNSTT 168

Query: 401 AA-PVSIYSFLGERIIL**KSKSVTMFSDFFNKMKSVCGAKVAK*SLSSTCVPSSATNRR 225
           +A P S  S     +     S S T  S   + + S   A     SLSST   +SAT+  
Sbjct: 169 SATPTS--SATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSS 226

Query: 224 -HSAQLALNPNFVRDFSINSSKFSAATPI 141
             S+ L    +     S  SS  S++TP+
Sbjct: 227 LASSSLNSTTSATATSSSISSTVSSSTPL 255


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 105 LFSFLYQN**VNFVQHLRKIKLY--KHN 28
           LFS LY    +NF++ LR  KLY  KHN
Sbjct: 342 LFSILYALYPINFLEFLRDPKLYASKHN 369


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = -2

Query: 320 DFFNKMKSVCGAKVAK*SLSSTCVPSSATNRRHSAQLALNPNFVRDFSINSSKFSAATPI 141
           D     K+VC           + +PS   +   S    L  N VRDFS N        P 
Sbjct: 323 DLPQNFKAVCFECFKAFFFKKSMIPSVLASLNVSVSYGLMMNLVRDFSKN-----LENPN 377

Query: 140 FFFAFD-ICNFISFFHFYT 87
           F++  + + +F  F  F T
Sbjct: 378 FYYEREYVDSFYDFLQFMT 396


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 227 RHSAQLALNPNFVRDFSI-NSSKFSAATPI 141
           RHS+ L+L+P    D  + NS  FS +TP+
Sbjct: 266 RHSSPLSLSPVITSDNDVANSLFFSNSTPL 295


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 391 TGAAATEFLSTNIKEKFKVFQKYIAAADDARTILSER 501
           T  A +  L+TN+      F+K++++   A+T LS +
Sbjct: 271 TSDAPSSLLNTNVSSSPSKFRKFLSSVIPAKTDLSAK 307


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 250 YHPRPRTGDILRSWH*TLTLCAI 182
           YHP     D  RSW   L  CA+
Sbjct: 140 YHPEVDVQDFTRSWTNGLAFCAL 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,197
Number of Sequences: 5004
Number of extensions: 47638
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)