Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O23
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594...    29   3.7  
09_06_0101 - 20864151-20864464,20864616-20864805,20865149-208653...    28   6.5  
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    28   6.5  
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726...    27   8.5  

>03_02_0150 +
           5941560-5941739,5942027-5942118,5942232-5942298,
           5942401-5942523,5942692-5942784,5943149-5943278,
           5943483-5943564,5943682-5943814,5944246-5944451,
           5944538-5944663,5945024-5945333,5945518-5945643,
           5946151-5946456
          Length = 657

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -1

Query: 432 LDVGGEELCGCGARVNIFLLRGANHIIVEVKISYHVFRFF**NEECLWSQGS 277
           LD GGE  CG  A+ N+F +   N       I Y +FRF   N E  W  G+
Sbjct: 386 LDSGGE--CGVPAQ-NMFYVPAENREQFWYSIDYGMFRFCIANTELDWRPGT 434


>09_06_0101 -
           20864151-20864464,20864616-20864805,20865149-20865310,
           20866073-20866186
          Length = 259

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 376 KEYIDTGAAATEFL--STNIKEKFKVFQKYIAAADDARTIL 492
           KE I+ G  A   +  S     KF+++Q Y+  A+DA+T +
Sbjct: 170 KEVIEEGIGAPALIQCSKGPFNKFQLYQIYVCVAEDAKTFV 210


>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 36  CTILFFVNVVQSLLINFGIKMKKGYKVTDVKREKKNW 146
           C + FF N   SLL+ +G+ +    K T + R  + +
Sbjct: 324 CKVFFFENHGHSLLLEYGVHVSSIIKCTSLYRHSRRY 360


>02_04_0236 -
           21170753-21170794,21171089-21172220,21172332-21172601,
           21173043-21173305,21173406-21173492,21174149-21174326,
           21174784-21174984,21175769-21176025
          Length = 809

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 DYLATLAPQTLFILLKKSENMVTDFDFY 351
           D  + LAP TLF+ L K EN+  D   +
Sbjct: 199 DAYSILAPSTLFVKLIKFENLTVDMTVF 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,521
Number of Sequences: 37544
Number of extensions: 287944
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)