Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O23
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00043-11|AAN65290.1|  641|Caenorhabditis elegans Hypothetical p...    29   2.5  
U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical
           protein W09D10.2 protein.
          Length = 1335

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 247 GTQVDDNDY-LATLAPQTLFILLKKSENMVTDFDFYYNMIRSPKKEYIDTGAAATEFLST 423
           G ++    Y + T  P+ LF  L ++ N+   F    NMI     +YI     A     T
Sbjct: 29  GNRISTTKYSVLTFIPKNLFEQLHRAANLYFIFIVILNMIIGAFGKYISVLPIAFVLGIT 88

Query: 424 NIKEKFKVFQKY 459
            IK+ F+ +++Y
Sbjct: 89  AIKDAFEDYRRY 100


>U00043-11|AAN65290.1|  641|Caenorhabditis elegans Hypothetical
           protein T26A5.2b protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 194 FVRDFSINSSKFSAATPIFFFAFDICNFISFFHFYTKIN 78
           F R+   NS  F  +   ++  FD+ +F+   H Y+ +N
Sbjct: 311 FTRNLVRNSKDFELSKAFYYVDFDLAHFVESDHCYSLLN 349


>U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical
           protein T26A5.2a protein.
          Length = 779

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 194 FVRDFSINSSKFSAATPIFFFAFDICNFISFFHFYTKIN 78
           F R+   NS  F  +   ++  FD+ +F+   H Y+ +N
Sbjct: 449 FTRNLVRNSKDFELSKAFYYVDFDLAHFVESDHCYSLLN 487


>Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical
           protein F36G9.2 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 248 PSSATN--RRHSAQLALNPNFVRD---FSINSSKFSAATPIFFFAFDICNFISFFHFY 90
           PS  +N  ++   Q+   P F+ +   F ++ +     T + FF  DIC  I FF FY
Sbjct: 159 PSDQSNILKKTMKQVPCIPGFIAEYPYFILSLNIIYCTTVVGFFVSDICFEILFFFFY 216


>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 182 FSINSSK-FSAATPIFFFAFDICNFISFFHF 93
           FS +SS  FSA  P FFF F +  FI  FHF
Sbjct: 9   FSTSSSSIFSAFIPSFFFTFPLFFFI--FHF 37


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 182 FSINSSK-FSAATPIFFFAFDICNFISFFHF 93
           FS +SS  FSA  P FFF F +  FI  FHF
Sbjct: 9   FSTSSSSIFSAFIPSFFFTFPLFFFI--FHF 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,332
Number of Sequences: 27780
Number of extensions: 266794
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)