Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O22
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    44   2e-05
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.9  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
 Frame = +1

Query: 85  TLPGPGITEPQALLVEALITFVLVLVVQGVCD-ARRIDLKGSAPLALGLSITACHAACIP 261
           T P P +T   A   E + T VLV  +  + D       +G     +GL I A   A   
Sbjct: 435 TNPKPYVTWRNAFFDEFIGTAVLVGCLFAILDDTNSPPTQGMTAFIVGLLIAAIGMALGY 494

Query: 262 ITGSSMNPARSFGPALV------------MGHWTAHWVYWVGPVIGGVIAGLLYKFIFRI 405
            T  ++NPAR  GP +             + HW   W  W G + GG+  GL+Y  +   
Sbjct: 495 QTSFTLNPARDLGPRMFAWWIGYGPHSFHLYHWWWTWGAWGGTIGGGIAGGLIYDLVIFT 554

Query: 406 G 408
           G
Sbjct: 555 G 555


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 104  IPGPGKVMPKVPTLSSGIASLMKAAPATAPKDP 6
            +P P    P VP  SSGI  + K A    P  P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +1

Query: 334 WVYWVGPVIGGVIAGLLYKFI 396
           WV+W+  ++G V+  +++ F+
Sbjct: 256 WVFWINMIMGAVVIVIIFFFM 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,468
Number of Sequences: 5004
Number of extensions: 46468
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)